Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G06.2
         (1256 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            75   4e-15
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    37   0.001

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 74.9 bits (176), Expect = 4e-15
 Identities = 45/170 (26%), Positives = 84/170 (49%)
 Frame = +2

Query: 215 LLVIGALGPGKPSIIKRYVHQFFSQHYXATIGVDFALKVLNWXSNTIIXLQLWDIAGQXR 394
           L+++G    GK S++ R+V   F ++  +TIG  F  + L    +T +  ++WD AGQ R
Sbjct: 27  LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTL-CIDDTTVKFEIWDTAGQER 85

Query: 395 FGNMTRVYYKEAVGAFIVFDVSRVATFDAVVKWKNDLDAKVQLPDGSAIPCILLANKCDQ 574
           + ++  +YY+ A  A +V+D+    +F     W  +L  +   P+   I   L  NK D 
Sbjct: 86  YHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQAS-PN---IVIALAGNKADL 141

Query: 575 QKEGIVNSPAKMDEYCREKGFAGWFETSAKENINIEEAARSLVNKILLND 724
               +V+   +  +Y  +     + ETSAK  +N+ +   ++  K+  N+
Sbjct: 142 ANSRVVDY-EEAKQYADDNRLL-FMETSAKTAVNVNDIFLAIAKKLPKNE 189


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
 Frame = +2

Query: 218 LVIGALGPGKPSIIKRYVHQFFSQHYXATIGVDFALKVLNWXSNTIIXLQLWDIAGQXRF 397
           +V+G    GK  ++  Y    F   Y  T   +++  ++       + L LWD AGQ  +
Sbjct: 10  VVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV--VDGVQVSLGLWDTAGQEDY 67

Query: 398 GNMTRVYYKEAVGAFIVFDVSRVATFDAVV-KWKNDLDAKVQLPDGSAIPCILLANKCDQ 574
             +  + Y +     I + V+  ++F+ V  KW  ++  K   PD    P IL+  K D 
Sbjct: 68  DRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEI--KHHCPDA---PIILVGTKIDL 122

Query: 575 QKE 583
           +++
Sbjct: 123 RED 125


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 980,553
Number of Sequences: 2352
Number of extensions: 16956
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 143878944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)