Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G04.2
         (1318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    31   0.35 
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   4.4  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 776 YICLPA--RM-DSDFTFKRTLFPYFIPKFHQIVSNKKTLVP 663
           YIC  +  RM  SDFT   TL     PK H ++ N+K+++P
Sbjct: 173 YICSTSYLRMTSSDFTTADTLVLDIDPKLHSLLKNEKSIIP 213


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -1

Query: 778 IIFVCLPEWTQTSPLKEHCSHISFQS-FIKLFP--IRRHWFPISTSCSKFTPLFSQRYST 608
           II +C+  W   S      +++S  S F+  F   I   ++ +     +  PL+S   S+
Sbjct: 390 IIALCMCPWNLLSSNNNFTTYLSSYSVFLSSFAGVIIADYYFVRKGLIRVAPLYSSSSSS 449

Query: 607 PXYFLFSLN 581
           P YF   +N
Sbjct: 450 PYYFWKGIN 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,305
Number of Sequences: 5004
Number of extensions: 51385
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)