Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G02.2
         (1259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    30   0.59 
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   2.4  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   2.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   7.2  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   7.2  

>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 891 VKVPSKSLFSQVIPD--NLCNTNVYKMGN 971
           VK+P KS+FS V+P+   +C+ N++   N
Sbjct: 67  VKIPQKSIFSIVVPEGPQVCDLNIWNFHN 95


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 636 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 752
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 599 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 778
           V S+L EL++WK   K +     P+ESN  +  +          ++ DN  P +E+  + 
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291

Query: 779 PRTDS 793
            R ++
Sbjct: 292 SRDNN 296


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = -1

Query: 806 HIFPWSLCVDCDPVFRLWGNNCHGCQHSTQNTHMYICVKLFH 681
           H +PW L    D   R+W      C         Y+    FH
Sbjct: 105 HEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFH 146


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 698 KCTCVYSGWNVDNRDNYYPITEILDRNPRTDSKEICV 808
           KCT  +   N   RD+Y    EI  R  RT  + IC+
Sbjct: 234 KCTLQHPPGNEIYRDDYISFFEIDGRKQRTWCRNICL 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,074
Number of Sequences: 5004
Number of extensions: 61353
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)