Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F23.2
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   5.3  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   7.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   9.3  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 668 CPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV 820
           C  F +R    +++  A  +     + + +W VCT+   + T   YP  IV
Sbjct: 138 CFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYPAHIV 188


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 644 RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 811
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 699 RHASRREKGGQV---SGKRQGRNRRAHEGASR 613
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,234,471
Number of Sequences: 5004
Number of extensions: 83830
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)