Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F21.2
         (1266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                      117   2e-26
06_02_0140 + 12255418-12255512,12257514-12257793                      117   2e-26
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    101   1e-21

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  117 bits (281), Expect = 2e-26
 Identities = 55/99 (55%), Positives = 73/99 (73%), Gaps = 2/99 (2%)
 Frame = +3

Query: 156 VNFHKRLHGVGFKKRAPSAIKAIRKFAEKQXGTPDIRVXTRLNKFLWSKGVXNVPFRVRV 335
           +N HKRLH   FKK+AP+AIK IRKFA+K  GT D+RV  +LNK +WS G+ +VP RVRV
Sbjct: 21  INLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRV 80

Query: 336 RLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLQTENVD 446
           R++R RND+E +  +L++LVT   VP   +KGL T+ VD
Sbjct: 81  RIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  117 bits (281), Expect = 2e-26
 Identities = 55/99 (55%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
 Frame = +3

Query: 156 VNFHKRLHGVGFKKRAPSAIKAIRKFAEKQXGTPDIRVXTRLNKFLWSKGVXNVPFRVRV 335
           +N HKRLHG  FKK+AP+AIK IRKFA+K  GT D+RV  +LNK +WS G+ +VP RVRV
Sbjct: 23  INLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRV 82

Query: 336 RLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLQTENVD 446
           R++R RND+E +  +L++LVT   VP   +KGL T+ V+
Sbjct: 83  RIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  101 bits (242), Expect = 1e-21
 Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 18/115 (15%)
 Frame = +3

Query: 156 VNFHKRLHGV----------------GFKKRAPSAIKAIRKFAEKQXGTPDIRVXTRLNK 287
           +N HKRLHG                  FKK+AP+AIK IRKFA+K  GT DIR+  +LNK
Sbjct: 22  INLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNK 81

Query: 288 FLWSKGVXNVPFRVRVRLSRXRNDDEXSAHKLFTLVTY--VPVASIKGLQTENVD 446
            +W+ G+ +VP RVRVR+SR RND+E +  +L++LVT   +P   +KGL T+ V+
Sbjct: 82  AIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,795
Number of Sequences: 37544
Number of extensions: 213108
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3922562724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)