Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F20.2
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    36   0.012
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    30   0.77 
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   4.1  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   5.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   9.5  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   9.5  

>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = +3

Query: 501 KSKYLPKLCSGEHIGALA---MSEPGSGSDVVSM-KLRAEKKGDYYVLNGNKFWITN--G 662
           K  +  KL SGE + A     M    + + V    +LR E    ++ +NGNK  ++N   
Sbjct: 167 KDYHRQKLLSGEILDAEEDEPMPNDANPTHVEEQERLRKETIAAFHDVNGNKDAVSNESD 226

Query: 663 PDADVLVVYAKTNWSTSKQQHGISAFLIE 749
            D D LV   KT     +++HG   FL+E
Sbjct: 227 EDGDFLVKKEKTKKQLEEEEHGYERFLLE 255


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 423 GGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSM 593
           GG A+    H  L   ++    TE+   K  PK+   E   A+ +S+P +GS +V +
Sbjct: 462 GGSAVHLTTHDKLA--KLVEALTEQYYKKQFPKITQSELNAAVVVSKPAAGSCIVQL 516


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 783 IFELLKTQDNLFQLKKLKSHVVVYSSTNLSWRIPLKH 673
           ++++LK +D + +      HVV+Y ST     IP+ H
Sbjct: 527 VYKVLKNKDKISKKIHKWDHVVLYGSTANGLTIPIVH 563


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 598 NFIDTTSLPDPGSDIASAPICSP 530
           +F   T+L DPG +IAS+P+  P
Sbjct: 733 SFQSPTALGDPGDNIASSPLILP 755


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 677 NICVWSISNPKLISVQHIIIAFLLCS*LH 591
           N+ V+S S+P L+ +   II   LC  +H
Sbjct: 20  NVVVYSASDPLLLFIVQAIIIIALCRLIH 48


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 519 KLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLN 635
           K+ +G  IGAL++  PG  S+V   ++R      Y + +
Sbjct: 117 KILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,663,847
Number of Sequences: 5004
Number of extensions: 71227
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)