Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_F16.2
(1269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0152 - 2260314-2260694 33 0.36
12_01_0374 - 2910752-2911516 31 1.9
06_01_0920 + 7098007-7098065,7098538-7099345 30 3.4
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 3.4
01_01_1195 - 9567023-9567789,9567871-9568120 30 3.4
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 29 5.9
12_01_0365 + 2775020-2775259,2775388-2775465,2775576-2775641,277... 29 7.8
11_04_0206 - 14867835-14868092 29 7.8
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 29 7.8
05_04_0011 + 17139322-17139451,17139552-17140174 29 7.8
>09_01_0152 - 2260314-2260694
Length = 126
Score = 33.5 bits (73), Expect = 0.36
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -1
Query: 543 GVESVAGGRADSEAGWGELHQRPSRTSDELPYRVICDGGLVASTGVDPYRS 391
GV GGR G G + Q + TS P R DGG A+ G D +R+
Sbjct: 2 GVGPACGGRRRRRWGLGRVRQTATATSGARPRRADGDGGASAARGDDLWRA 52
>12_01_0374 - 2910752-2911516
Length = 254
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 554 RHHSAIVTKSTSVLSGDSKEPAPAPSPADSGVSELERDHHDY 679
RHH+AI+T V + + PAPAP P + ++ Y
Sbjct: 213 RHHAAILTAFAEVCAQLAAPPAPAPPPPPQPTAAYHYHYYHY 254
>06_01_0920 + 7098007-7098065,7098538-7099345
Length = 288
Score = 30.3 bits (65), Expect = 3.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 569 IVTKSTSVLSGDSKEPAPAPSPADSGVSELER 664
++ T +L ++EP+P PSP SGV E R
Sbjct: 131 VLASLTEMLRAKNQEPSPPPSPLLSGVQEPSR 162
>04_04_0751 -
27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 531 VAGGRADSEAGWGELHQRPSRTSDELPYRV--ICDGGLVASTGVDPYRSPPAERRPPS 364
+ GG A + AG LH+ S ELP+ V + G + + G+D PPS
Sbjct: 93 MVGGGAAAAAGVNRLHEMVSEEQGELPHTVVDVLLGTMGGADGLDEVEDKTGTGAPPS 150
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +2
Query: 554 RHHSAIVTKSTSVLSGDSKEPAPAPSPADSGVSELERDHHDYS 682
R S + S S PAPAP P V L HH YS
Sbjct: 151 REQSGAFRRRKPSSSSASPAPAPAPPPPPQPVVALHHHHHRYS 193
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 584 TSVLSGDSKEPAPAPSP---ADSGVSELERD 667
TS ++ PAPAP+P DSGV E+E D
Sbjct: 67 TSTPPAPTQSPAPAPTPPPLPDSGVGEIEPD 97
>12_01_0365 +
2775020-2775259,2775388-2775465,2775576-2775641,
2775736-2775834
Length = 160
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 854 AGEIALLKTQLKDAQNEQTTKGHEYLTLKADXRQLK 961
A ++A L TQ + + E+ T EYL+LK +QLK
Sbjct: 113 ARKVADLSTQNESMKKERETVMQEYLSLKETNKQLK 148
>11_04_0206 - 14867835-14868092
Length = 85
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 723 PVASCYRASAAVETRGTPNSPGSGETERSYDRDLRIPNG 839
P S ++AAV T G+P + GE ER +R + G
Sbjct: 20 PATSSSSSAAAVATGGSPLTTSMGERERDRERQMTAVRG 58
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 29.1 bits (62), Expect = 7.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 563 SAIVTKSTSVLSGDSKEPAPA-PSPADSG--VSELERDHHDYSTTDRLRHEARLRAPRG 730
SA S S+ S SK+P+ A P P D G V+E D + D+L AR R G
Sbjct: 438 SATNALSWSMFSSSSKKPSMAPPPPLDGGVPVAEFSIDGGGDARGDKLMENARRRIAAG 496
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 29.1 bits (62), Expect = 7.8
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -1
Query: 546 SGVESVAGGRADSEAGWGELHQR--PSRTSDELPYRVICDGGLVASTGVDPYRS------ 391
+G + + G+ + G +H + P S VI DG + TG DP +
Sbjct: 114 NGGKVIGDGKRLTPTGPDPVHNKFQPPPPSPPNGGNVIGDGKRLTPTGPDPIHNEFQPPP 173
Query: 390 PPAERRPPSGLNAIG 346
PP PP+G N IG
Sbjct: 174 PPPPPSPPNGANVIG 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,765,013
Number of Sequences: 37544
Number of extensions: 511477
Number of successful extensions: 2300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2280
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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