Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F16.2
         (1269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    29   7.0  

>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -1

Query: 537 ESVAGGRADSEAGWGELHQRPSRTSDELPYRVICDGGLVASTGVDPYRSPPAER-RPPSG 361
           ES+A G     +G+ +  QRP  T+ +LPY +    G V    + P   PP  R  P   
Sbjct: 708 ESMATGAPLDLSGFPQYQQRPVATNSKLPYFIPPPQGYVGP--LPPAPPPPTFRVAPQVP 765

Query: 360 LNAIGRITDLPLPRKP 313
           L  +      P P  P
Sbjct: 766 LPVVQTTQTAPKPTLP 781


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 544 RSGERGGWKSGQRGG-LGRTAPTTFTYV**ASVQSHMRRWPCSEHRSGSISLSARRE 377
           R G+RGG++ G RGG  G            A+++     WPC +   G+ + + RRE
Sbjct: 361 RGGDRGGFRGGDRGGDRGGFRGGRGVGGGNANMEQRKNDWPCEQ--CGNSNFAFRRE 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,578,989
Number of Sequences: 27780
Number of extensions: 371596
Number of successful extensions: 1380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)