Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F16.2
         (1269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.20 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.80 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   7.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 620 PAPSPADSGVSELERDHHDYS-TTDRLRHEARL 715
           PAP   +S   + E D+ DYS TTD  RH + L
Sbjct: 214 PAPRLTNSNSIKHESDNSDYSHTTDENRHSSTL 246


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 575 TKSTSVLSGDSKEPAPAPSPADSGVSELERDHHDYSTTD-RLRHEARLRAPRGLMLQSFG 751
           T +T+   G    PA   SPADSGVS++E         D  L  +ARL  P   +  S  
Sbjct: 229 TMATTSTPGSGSLPA---SPADSGVSDVESSTSSGGNEDANLLLKARLN-PNSSLQPSLA 284

Query: 752 S 754
           S
Sbjct: 285 S 285


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 495 PSPPRCPLFHPPRSP 539
           P PP+CP F    SP
Sbjct: 563 PQPPQCPRFRKLDSP 577


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 181 NRYRFTYN*ACKKDTYH 131
           N Y++ YN  CKK  Y+
Sbjct: 94  NNYKYNYNNNCKKLYYN 110


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 723  PVASCYRASAAVETRGTP 776
            PV SC     AVET+  P
Sbjct: 1707 PVVSCASGCTAVETKSKP 1724


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,900
Number of Sequences: 438
Number of extensions: 4821
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)