Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_F14.2
(1295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 440 e-124
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 254 2e-68
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 242 6e-65
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 161 3e-40
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 90 7e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 88 3e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 5e-15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 69 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 68 3e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.007
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.20
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 2.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 5.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 5.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 440 bits (1084), Expect = e-124
Identities = 213/270 (78%), Positives = 224/270 (82%)
Frame = +1
Query: 229 GSGXCKAGFAGRLLLLAPCSPRXVGRPRHQGVXVGMGQXXSYVGXXAQXKSGILTLKYPI 408
GSG CKAGFAG A P VGRPRH G+ VGMGQ SYVG AQ K GILTLKYPI
Sbjct: 13 GSGMCKAGFAGDDAPRA-VFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPI 71
Query: 409 EHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 588
EHGIV NWDDMEK WHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA
Sbjct: 72 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPA 131
Query: 589 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 768
YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 132 FYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
Query: 769 ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMXTXAXXXXXXXXYELPDGQVITIG 948
IL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ T A YELPDGQVITIG
Sbjct: 192 ILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIG 251
Query: 949 XERFXCPXALFQPSFXGMEAXGITKHIYSS 1038
ERF P ALFQPS G+E GI + Y+S
Sbjct: 252 NERFRAPEALFQPSALGLENAGIHEATYNS 281
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 379
Score = 254 bits (622), Expect = 2e-68
Identities = 124/271 (45%), Positives = 171/271 (63%), Gaps = 1/271 (0%)
Frame = +1
Query: 229 GSGXCKAGFAGRLLLLAPCSPRXVGRPRHQGVXVGMGQXXSYVGXXAQXKSGILTLKYPI 408
GSG KAGFAG + P VGR +H+ V Q +VG AQ G+L ++ PI
Sbjct: 17 GSGFIKAGFAGDDIPKC-LFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPI 75
Query: 409 EHGIVTNWDDMEKXWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 585
E GI+ NW DME+ W + + ++ L PEEHP+LLTE PL N+EK+ + +ET N P
Sbjct: 76 ERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVP 135
Query: 586 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 765
A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Query: 766 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMXTXAXXXXXXXXYELPDGQVITI 945
L + G+ ++AE+EIVR+IKEK CYVA DF E+ + Y+LPD Q IT+
Sbjct: 196 LQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITL 255
Query: 946 GXERFXCPXALFQPSFXGMEAXGITKHIYSS 1038
G E F P LF P G EA G+ ++ S
Sbjct: 256 GTECFSAPEVLFNPEMMGSEASGLHIQLFKS 286
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 242 bits (593), Expect = 6e-65
Identities = 119/272 (43%), Positives = 169/272 (62%), Gaps = 2/272 (0%)
Frame = +1
Query: 229 GSGXCKAGFAGRLLLLAPCSPRXVGRP--RHQGVXVGMGQXXSYVGXXAQXKSGILTLKY 402
G+G K G+A P VGRP R + + VG A+ +L +KY
Sbjct: 11 GTGFVKVGYAKDNFPRFQF-PSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKY 69
Query: 403 PIEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 582
P+E+GI+ ++++M + W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 583 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 762
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYL 189
Query: 763 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMXTXAXXXXXXXXYELPDGQVIT 942
+ +L +GY+F TA+ E VR++KEKLCYV+ D E + Y LPDG+VI
Sbjct: 190 ISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIK 249
Query: 943 IGXERFXCPXALFQPSFXGMEAXGITKHIYSS 1038
+G ER+ CP LFQP G E G+++ I+ +
Sbjct: 250 VGSERYECPECLFQPHLVGSEQPGLSEFIFDT 281
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 161 bits (390), Expect = 3e-40
Identities = 93/227 (40%), Positives = 124/227 (54%), Gaps = 15/227 (6%)
Frame = +1
Query: 352 YVGXXAQXKSGI-LTLKYPIEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLN 528
++G A K+ +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 529 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTV 684
P NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Query: 685 PIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVAL 858
P+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ CYV
Sbjct: 195 PVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCP 249
Query: 859 DFEQEMXTXAXXXXXXXXY--ELPDGQ--VITIGXERFXCPXALFQP 987
D +E Y E G I +G ERF P F P
Sbjct: 250 DIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 89.8 bits (213), Expect = 7e-19
Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Frame = +1
Query: 403 PIEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 582
P E +++NWD ME+ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 583 PAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 756
P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G +
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204
Query: 757 YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 876
YL+K+ + SF + C+V+ D+ ++
Sbjct: 205 YLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDI 244
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.8 bits (208), Expect = 3e-18
Identities = 44/134 (32%), Positives = 68/134 (50%)
Frame = +1
Query: 388 LTLKYPIEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 567
+ +K I +G V NWD W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 568 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 747
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 748 LTDYLMKILTERGY 789
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 913 YELPDGQVITIGXERFXCPXALFQP 987
+E PDG + G ER+ P LF P
Sbjct: 264 FEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.0 bits (181), Expect = 5e-15
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 2/165 (1%)
Frame = +1
Query: 307 PRHQGVXVGMGQXXSYVGXXAQXKSGI--LTLKYPIEHGIVTNWDDMEKXWHHTFYNELR 480
P + GV + YV Q + I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 481 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 660
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 661 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 795
G + P+ +G + I + LAG L + ++ F
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 29.9 bits (64), Expect = 0.80
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 913 YELPDGQVITIGXERFXCPXALFQPSF 993
+E PDG G ERF LF PSF
Sbjct: 281 FEFPDGVTHKFGQERFRISEILFNPSF 307
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 68.5 bits (160), Expect = 2e-12
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +1
Query: 403 PIEHGIVTNWDDMEKXWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 570
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 571 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 750
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 751 TDYLMKILTERGYSFTTTAEREIVRDIKE 837
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 67.7 bits (158), Expect = 3e-12
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 36/246 (14%)
Frame = +1
Query: 409 EHGIVTNWDDMEKXWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNT 582
E G + +W W N + P ++ +LLT+ + Q++FE F
Sbjct: 64 EKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
Query: 583 PAMYVAIQAVLSLYASGRTTG--------------IVLDSGDGVSHTVPIYEGYALPHAI 720
A A L + G T +V+DSG +H +P+ + A+
Sbjct: 124 DAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAV 183
Query: 721 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMXT--XAXX 894
R+D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M
Sbjct: 184 KRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYVSQNFKEDMEICHEKPR 241
Query: 895 XXXXXXYELPD------------------GQVITIGXERFXCPXALFQPSFXGMEAXGIT 1020
Y LPD QV+ + ERF P LF PS + GI
Sbjct: 242 SKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIP 301
Query: 1021 KHIYSS 1038
+ + S
Sbjct: 302 EAVMQS 307
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/101 (18%), Positives = 48/101 (47%)
Frame = +1
Query: 493 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 672
++ V+ L + EK+ I+F + + +++ + + +G + V+D G
Sbjct: 243 QYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQK 302
Query: 673 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 795
+ + EG +P++ ++++ G D+T MK+L + +
Sbjct: 303 TSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.20
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 463 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 606
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 587 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 721
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 721
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 721
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 563 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 721
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 563 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 721
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 608 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 712
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 4.3
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTRDTHSPTPSCVWT*PVXXX 751
PP PS P P +PP + P + P P P P+ PV
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 752 XXXXXXXXXXXXXXXXXXXXGKSFVTSRRSCATSLLTSSRRWXPXHPAAPSXSL 913
G + SR+ A+ + S++ P A PS +L
Sbjct: 492 AELPQQDGRANLMASIRASGGMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNL 545
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 608 PCSRCTRPVVPPVSCWTPATVSPTPCPST 694
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 691
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 505 LLTEAPLNPKANREKMTQIMFETFN 579
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,577,108
Number of Sequences: 5004
Number of extensions: 65210
Number of successful extensions: 247
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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