Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_F13.2
(1389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 30 5.0
12_02_0299 - 17051570-17052474,17053542-17053755 29 6.6
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 6.6
04_03_0904 + 20717005-20718087 29 6.6
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 8.7
10_07_0154 + 13487971-13488168,13488259-13488483,13488592-134904... 29 8.7
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 29 8.7
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763... 29 8.7
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 29 8.7
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -3
Query: 538 PHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPP 422
P PP P +P PP+ P P Q P PP
Sbjct: 153 PPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPP 191
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = -3
Query: 589 PXXXXXFXXXIPXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPP 422
P F P PH PP P P P PP P PFPP
Sbjct: 291 PPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPP------PPPPSFPWPFPP 340
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 556 PXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPPAXXXXXXXXKTXXTS 377
P P SPP P P+P P P P PA + TS
Sbjct: 419 PPSPRHPSSPPPLRSPPRQPTPPPSPSQQPPLLAPQPVQASPTSPAKQHAPPAPSSVQTS 478
Query: 376 PQT 368
P T
Sbjct: 479 PPT 481
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/70 (24%), Positives = 22/70 (31%)
Frame = -3
Query: 556 PXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPPAXXXXXXXXKTXXTS 377
P H+P P P P PP P P P+ P + T
Sbjct: 98 PKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTP---APYTPTPTPPTYKPQPKPTP 154
Query: 376 PQTFXKKXKP 347
P T+ + KP
Sbjct: 155 PPTYKPQPKP 164
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 529 PPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPP 422
PP P P +PAPP G+A P PP
Sbjct: 27 PPPPPHPPPPPPLEPAPPSTPQLRGEASPPPPPPPP 62
>10_07_0154 +
13487971-13488168,13488259-13488483,13488592-13490492,
13490578-13490829,13491110-13491191,13491466-13491657
Length = 949
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 556 PXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPPAXXXXXXXXKTXXTS 377
P P SPP P P+P P P P PA + TS
Sbjct: 540 PPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSPAKQHAPPAPSSVQTS 599
Query: 376 PQT 368
P T
Sbjct: 600 PPT 602
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 556 PXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPPAXXXXXXXXKTXXTS 377
P P SPP P P+P P P P PA + TS
Sbjct: 484 PPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSPAKQHAPPAPPSVQTS 543
Query: 376 PQT 368
P T
Sbjct: 544 PPT 546
>09_02_0349 -
7632140-7632234,7632348-7632449,7632864-7632962,
7633517-7633622,7633897-7633978,7634068-7634178,
7634259-7634510,7634596-7635688,7636157-7636829,
7636920-7637117
Length = 936
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 556 PXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPPAXXXXXXXXKTXXTS 377
P P SPP P P+P P P P PA + TS
Sbjct: 420 PPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSPAKQHAPPAPPSVQTS 479
Query: 376 PQT 368
P T
Sbjct: 480 PPT 482
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 556 PXXXXXPHSPPXXXXXPXXQPXDPAPPLXXPXXGKAPXXQXPFPPAXXXXXXXXKTXXTS 377
P P SPP P P+P P P P PA + TS
Sbjct: 530 PPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSPAKKHAPPAPPSVQTS 589
Query: 376 PQT 368
P T
Sbjct: 590 PPT 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,880
Number of Sequences: 37544
Number of extensions: 110458
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4373994716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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