Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F08.2
         (1289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   217   3e-57
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   217   3e-57
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   217   3e-57
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   128   2e-30
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   1.8  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  217 bits (530), Expect = 3e-57
 Identities = 107/127 (84%), Positives = 111/127 (87%)
 Frame = +1

Query: 82  LARTXXPARKSTGGXAPRKQLXXXXXRKSAPAXGGVKXPHRYRPGTVALREIRRYQKSTE 261
           +ART   ARKSTGG APRKQL     RK+APA GGVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 262 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 441
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 442 MPKDIQL 462
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  217 bits (530), Expect = 3e-57
 Identities = 107/127 (84%), Positives = 111/127 (87%)
 Frame = +1

Query: 82  LARTXXPARKSTGGXAPRKQLXXXXXRKSAPAXGGVKXPHRYRPGTVALREIRRYQKSTE 261
           +ART   ARKSTGG APRKQL     RK+APA GGVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 262 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 441
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 442 MPKDIQL 462
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  217 bits (530), Expect = 3e-57
 Identities = 107/127 (84%), Positives = 111/127 (87%)
 Frame = +1

Query: 82  LARTXXPARKSTGGXAPRKQLXXXXXRKSAPAXGGVKXPHRYRPGTVALREIRRYQKSTE 261
           +ART   ARKSTGG APRKQL     RK+APA GGVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 262 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 441
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 442 MPKDIQL 462
            PKD+QL
Sbjct: 121 QPKDMQL 127


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  128 bits (308), Expect = 2e-30
 Identities = 64/93 (68%), Positives = 79/93 (84%), Gaps = 6/93 (6%)
 Frame = +1

Query: 202 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSSAVMALQ 363
           RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS+A+  LQ
Sbjct: 21  RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQ 80

Query: 364 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 462
           EA+EA+LV LFEDTNLCAIHAKRVTIM +D+QL
Sbjct: 81  EAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQL 113


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 199 HRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRFQSSAVMALQ-- 363
           HR +    +L E + +++ S  LLI   P Q  +RE+A   DF    +F+    + L+  
Sbjct: 511 HRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAP 570

Query: 364 -EASEAYLVGLFE 399
            E  EAY+  L E
Sbjct: 571 DEEQEAYIRSLQE 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,464
Number of Sequences: 5004
Number of extensions: 38661
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)