Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F08.2
         (1289 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     225   2e-60
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       209   1e-55
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    27   0.90 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   1.6  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   6.3  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  225 bits (551), Expect = 2e-60
 Identities = 111/127 (87%), Positives = 115/127 (90%)
 Frame = +1

Query: 82  LARTXXPARKSTGGXAPRKQLXXXXXRKSAPAXGGVKXPHRYRPGTVALREIRRYQKSTE 261
           +ART   ARKSTGG APRKQL     RKSAP+ GGVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 262 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 441
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 442 MPKDIQL 462
           MPKDIQL
Sbjct: 121 MPKDIQL 127


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  209 bits (511), Expect = 1e-55
 Identities = 104/115 (90%), Positives = 104/115 (90%)
 Frame = +1

Query: 88  RTXXPARKSTGGXAPRKQLXXXXXRKSAPAXGGVKXPHRYRPGTVALREIRRYQKSTELL 267
           RT   ARKSTGG APRKQL     RKSAPA GGVK PHRYRPGTVALREIRRYQKSTELL
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 60

Query: 268 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 432
           IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 61  IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 115


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +1

Query: 226 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 375
           + +IR   K +++ + +     L+RE+A + K  + F+ +AVM + +++E
Sbjct: 71  VNDIRNRFKDSDVDVTRKDGILLLRELAAEVKNFMDFKMNAVMRIMDSAE 120


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 402 HQLVRHSCQKGHHYAKGYSAGEESAGR 482
           HQL+ +S  +    ++G S G  SAGR
Sbjct: 219 HQLITYSVGEAEQQSRGLSTGGPSAGR 245


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -3

Query: 282 RQLADQKLGAFLVSPYLSEGYGAGSISVGLLHAAGRRCAFSGSXRRELFARSXPPCRLSG 103
           + L+   + +  +SP+  + YG GS S+G  H  G          +   +   PP  L G
Sbjct: 276 QNLSSPTIRSLHISPHHGQSYGLGS-SLGSAHHGGSAGTLGSLVGKYDLSALSPPGSLGG 334


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,356
Number of Sequences: 2352
Number of extensions: 10038
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 148375161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)