Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F07.2
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    29   1.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   1.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    28   2.3  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   5.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   5.3  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   9.2  

>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 463 NEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVK 636
           NE+ +   Q + L AF +G + + DEE  R +   + A E   + I++ G+++SE  K
Sbjct: 95  NELNDPIVQEKILRAFEQGHVDEEDEE--RCRKMASDASEEKDRKIEE-GELTSEEEK 149


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 20/85 (23%), Positives = 41/85 (48%)
 Frame = +1

Query: 463 NEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNA 642
           +E++ +   ++E     +    +V EE+   K Q+ I++ ++ +  +KY  V SE ++  
Sbjct: 296 SELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSE-LQVV 354

Query: 643 KEKFSQLKSELHGLIYSMFPNTSAL 717
           KE  +   S   GL   +    SA+
Sbjct: 355 KENKNTSVSAGVGLFSPLAQKLSAV 379


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 359 YQINAYPTYKHLKRKLKIQTRLSLQMRIY 445
           Y +  YP++  LK   KI+TRLSL  +++
Sbjct: 177 YMLIGYPSFFFLKNGSKIETRLSLLPKLH 205


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 466 EIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQ-VSSEHVKNA 642
           E K++  + EE+    K      D EI+R  N  T  ++ + KPI    + +++ ++ N 
Sbjct: 194 ESKKRKFEEEEIDREAKSLFSSQDGEIIRRLNAETTVEKELPKPIDLVSEKLATSNIPNF 253

Query: 643 K-EKFSQLKSE 672
           +  K+++ K E
Sbjct: 254 QPPKYAKRKME 264


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +1

Query: 520  SIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNAKEKFSQLKS 669
            +IR+++E++MRL +++ + Q +    +Q+  + ++      +   SQL S
Sbjct: 1001 NIRELNEKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLAS 1050


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 166 FKVQLLIGSETFTNSKLFKMTSKHNTETLDALKREIK--TLQNNCLNVCNIIENAP 327
           F + ++   +   N+ L K  S    E L+ L  ++K  TLQ  C  VC +IE  P
Sbjct: 723 FVLMIVSSYQLLDNTVLMKDYSFTIFEKLNDLLDDVKNETLQALCKTVCLLIETTP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,936
Number of Sequences: 5004
Number of extensions: 69919
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)