Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F06.2
         (1270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   236   4e-63
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   206   7e-54
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   2.4  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    28   2.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   9.6  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  236 bits (578), Expect = 4e-63
 Identities = 117/242 (48%), Positives = 160/242 (66%)
 Frame = +3

Query: 258 SVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 437
           S+F V+GGHRAI ++ IGG++  ++ EG HF IPW +  I YD+R++PR ISS TG+KDL
Sbjct: 35  SLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDL 94

Query: 438 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 617
           QMVNI+ RVLSRPD + L  +YR LG DYDE+VLPSI NEVLKSVVA+FNASQLITQR++
Sbjct: 95  QMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRER 154

Query: 618 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQ 797
           VS L+R  L++RAA FNI+LDDVSLT + F  E+T                     RA+ 
Sbjct: 155 VSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARM 214

Query: 798 ERQQKIVQXXXXXXXXXXXXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLPGXSLM 977
           E+Q  IV+                  PG+++LRK+  A+ I+ + ++S N+V L   +L+
Sbjct: 215 EKQGFIVRAQGEGRAAQLIGEAIKNKPGFIELRKLETAREIANILSKSNNKVMLNASTLL 274

Query: 978 IN 983
           ++
Sbjct: 275 LD 276


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  206 bits (502), Expect = 7e-54
 Identities = 96/188 (51%), Positives = 135/188 (71%)
 Frame = +3

Query: 258 SVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 437
           S++ V GG RA++F+ + GVQ+ V  EG HF IPW Q  I+YD+R+RPR I++ TGSKDL
Sbjct: 25  SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDL 84

Query: 438 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 617
           QMV+++LRVL RP+  ML  +Y+ LG DYDE+VLPSI NE+LKSVVA+F+A++LITQR+ 
Sbjct: 85  QMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREV 144

Query: 618 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQ 797
           VS  IR+ELV+RA +F I L+DVS+T ++FGKE+T                     +++Q
Sbjct: 145 VSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQ 204

Query: 798 ERQQKIVQ 821
           ERQ  +++
Sbjct: 205 ERQANVIR 212


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = -1

Query: 706 KLSSVRDTSSRIILKSAARSTNSLLISRDTC*RCVISWEALNLATTDFRTSLHIDGKTFS 527
           ++SS   + S  I  +++ + +S +IS         S      +++DF +S+       S
Sbjct: 506 EVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGIS 565

Query: 526 S*SVPSCLYIVASILASGRESTRREMFTICKS 431
           S S+PS    V+SIL+S   S      +I  S
Sbjct: 566 SSSIPSTFSSVSSILSSSTSSPSSTSLSISSS 597


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 318 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKD 434
           Q H F +  ++ +PW+  P      +  R +  PTG+ D
Sbjct: 324 QIHYFEDFGYYHLPWYHCPTDVQSHATARCLCDPTGTID 362


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 426  SKDLQMVNISLRVLSRPDANML--ATMYRQLGTDYDEKVLPSICNEVLKSVV 575
            S DLQM ++ ++ L    ++ L   T+Y  + +DY+  V  S+C E+L   +
Sbjct: 1252 SNDLQMESVCMKFLREKLSHELKELTVYYMVESDYEPDV--SLCPELLSLAI 1301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,493,207
Number of Sequences: 5004
Number of extensions: 64827
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)