Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_F06.2
(1270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 237 1e-62
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 210 1e-54
02_04_0362 - 22366668-22367516 206 3e-53
04_04_0143 - 23091613-23092467 206 4e-53
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 166 4e-41
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 93 6e-19
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 33 0.48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 30 3.4
>03_06_0626 - 35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 237 bits (580), Expect = 1e-62
Identities = 117/250 (46%), Positives = 161/250 (64%)
Frame = +3
Query: 258 SVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 437
S++ VEGGHRAI+FN + G++ V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DL
Sbjct: 30 SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89
Query: 438 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 617
QMV I LRVL+RP L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+
Sbjct: 90 QMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREA 149
Query: 618 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQ 797
VS IR+ L ERA++FNI LDDVS+T LSFGKE+T +A+Q
Sbjct: 150 VSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQ 209
Query: 798 ERQQKIVQXXXXXXXXXXXXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLPGXSLM 977
+++ I++ NP +L LR+I AA+ IS A S N+V+L L+
Sbjct: 210 DKRSAIIRAQGEAKSAQLIGEAINNNPAFLALRQIEAAREISHTMASSNNKVYLDSKDLL 269
Query: 978 INLQDXTFDD 1007
+ LQ D+
Sbjct: 270 LGLQQLNVDN 279
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 210 bits (514), Expect = 1e-54
Identities = 107/229 (46%), Positives = 143/229 (62%)
Frame = +3
Query: 312 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 491
G V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185
Query: 492 ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNI 671
T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA +FNI
Sbjct: 186 PTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNI 245
Query: 672 ILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQERQQKIVQXXXXXXXXXX 851
LDDVS+T LSFGKE+T +A+Q+++ I++
Sbjct: 246 ALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKSAEL 305
Query: 852 XXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLPGXSLMINLQDXT 998
NP +L LR+I AA+ IS + S N+VFL L++NLQ T
Sbjct: 306 IGQAIANNPAFLALRQIEAAREISHTMSSSANKVFLDSNDLLLNLQQLT 354
Score = 33.9 bits (74), Expect = 0.27
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3
Query: 258 SVFTVEGGHRAIMFNXIGGVQ 320
S++ VEGGHRAI+FN I G++
Sbjct: 36 SLYNVEGGHRAIVFNRIQGIK 56
>02_04_0362 - 22366668-22367516
Length = 282
Score = 206 bits (503), Expect = 3e-53
Identities = 104/238 (43%), Positives = 150/238 (63%), Gaps = 1/238 (0%)
Frame = +3
Query: 252 SQSVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 431
S +++TV+GG RA++F+ GV +EG HF +PW Q P I+DIR+RP SS +G+K
Sbjct: 30 STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89
Query: 432 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 611
DLQMV+++LRVL+RPD + L ++ LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 90 DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER 149
Query: 612 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRA 791
VS L+R L+ RAA+FNI+LDDV++T L++G E++ RA
Sbjct: 150 PHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARA 209
Query: 792 KQERQQKIVQ-XXXXXXXXXXXXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLP 962
+QER+ IV+ G ++LR+I AA+ I+ A+S N ++P
Sbjct: 210 EQERRAAIVRAEGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPNVSYIP 267
>04_04_0143 - 23091613-23092467
Length = 284
Score = 206 bits (502), Expect = 4e-53
Identities = 105/238 (44%), Positives = 148/238 (62%), Gaps = 1/238 (0%)
Frame = +3
Query: 252 SQSVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 431
S S++TV+GG RA++F+ GV EG HF +PW Q P ++DIR+RP SS +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 432 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 611
DLQMVN++LR+LSRPD L T++ LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 612 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRA 791
VS L+R L+ RA +FNIILDDV++T LS+G E++ +A
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKA 208
Query: 792 KQERQQKIVQ-XXXXXXXXXXXXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLP 962
+QER+ IV+ G ++LR+I AA+ I+ A+S N ++P
Sbjct: 209 EQERRAAIVRAEGESESARLISEATAAAGTGLIELRRIEAAREIAAELARSPNVAYVP 266
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 166 bits (403), Expect = 4e-41
Identities = 81/134 (60%), Positives = 104/134 (77%)
Frame = +3
Query: 321 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 500
Q V+ EG F I F+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 501 YRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIILD 680
YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI LD
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 681 DVSLTELSFGKEYT 722
DVS+T LSFGKE+T
Sbjct: 336 DVSITSLSFGKEFT 349
Score = 41.9 bits (94), Expect = 0.001
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 873 NPGYLKLRKIRAAQSISRMXAQSXNRVFLPGXSLMINLQDXTFD 1004
NP +L LR+I AA+ IS A+S N+V+L L++ LQ D
Sbjct: 372 NPAFLALRQIEAAREISHTMARSNNKVYLDSKDLLLGLQQLNVD 415
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 92.7 bits (220), Expect = 6e-19
Identities = 51/110 (46%), Positives = 69/110 (62%)
Frame = +3
Query: 285 RAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 464
R I N + Q + E HF IPWF+ I+D+ RP + S +GS+DLQMV L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 465 LSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 614
L+RP L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI R+
Sbjct: 383 LTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 33.1 bits (72), Expect = 0.48
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 273 EGGHRAIMFNXI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 401
EGGHR +++ + GG+Q+H++ G +I F IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 30.3 bits (65), Expect = 3.4
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +3
Query: 495 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 647
T+ +G D+K + N+ K VV + +L+ + VS R+E+V
Sbjct: 51 TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
Query: 648 ERAADFNIILDDVSLTELSFGKE 716
ERAA +I++ + +LS+ E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,477,909
Number of Sequences: 37544
Number of extensions: 432238
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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