Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F06.2
         (1270 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   301   7e-82
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   192   6e-49
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    31   2.3  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
            prohibitin complexprotein 2 protein.
          Length = 294

 Score =  301 bits (739), Expect = 7e-82
 Identities = 146/250 (58%), Positives = 181/250 (72%)
 Frame = +3

Query: 252  SQSVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 431
            +QS+FTVE GHRAIMFN IGG+   ++ EG+HFRIPWFQYPIIYDIR+RP +I SPTGSK
Sbjct: 37   AQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSK 96

Query: 432  DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 611
            DLQMVNI LRVLSRP+   L  +YR LG +++E+VLPSICNEVLK VVAKFNASQLITQR
Sbjct: 97   DLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQR 156

Query: 612  QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRA 791
            QQVS+L+R+ L+ERA DFNIILDDVSLTEL+F  +Y+                     RA
Sbjct: 157  QQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERA 216

Query: 792  KQERQQKIVQXXXXXXXXXXXXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLPGXS 971
            KQ++Q+KIVQ                 +PG+LKLRKIRAAQ I+R+ ++S N+ +LP   
Sbjct: 217  KQQKQEKIVQAEGEAESAKLLGEAMKNDPGFLKLRKIRAAQKIARIVSESGNKTYLPTGG 276

Query: 972  LMINLQDXTF 1001
            LM+N+ D  +
Sbjct: 277  LMLNIADTDY 286


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  192 bits (467), Expect = 6e-49
 Identities = 101/246 (41%), Positives = 146/246 (59%), Gaps = 2/246 (0%)
 Frame = +3

Query: 258 SVFTVEGGHRAIMFNXIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 437
           +++ V+GG RA++F+   GV+  V  EG HF IPW Q PII+DIRS PR +++ TGSKDL
Sbjct: 29  ALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDL 88

Query: 438 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 617
           Q VNI+LR+L RP  + L  +Y  +G DY E+VLPSI NEVLK+VVA+F+A ++ITQR+ 
Sbjct: 89  QNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREV 148

Query: 618 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXXRAKQ 797
           VS      L ERAA F ++LDD+++T L+FG+E+T                     +A+Q
Sbjct: 149 VSQRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQ 208

Query: 798 ERQQKI-VQXXXXXXXXXXXXXXXXXNPGYLKLRKIRAAQSISRMXAQSXNRVFLPG-XS 971
            +   +                      G ++LRKI AA+ I+   A++ N  +LPG   
Sbjct: 209 MKIAAVTTAEGDAQAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQQ 268

Query: 972 LMINLQ 989
            ++NLQ
Sbjct: 269 TLLNLQ 274


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 337 KVCTSVYRGFNTPSFMISDPDLARYLPRLVQKI 435
           K  T +  GFN PS MISD +L   + R+++ +
Sbjct: 291 KTSTDIIDGFNVPSNMISDDNLPALIYRVIETL 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,546,951
Number of Sequences: 27780
Number of extensions: 371244
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)