Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_F04.2
(1284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 142 7e-35
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 87 5e-18
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 87 7e-18
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 87 7e-18
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 77 4e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 34 0.037
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 32 0.15
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.26
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.79
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.79
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 29 1.8
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 1.8
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 29 1.8
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 29 1.8
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 28 3.2
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 5.6
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 7.4
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 9.8
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 9.8
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 142 bits (345), Expect = 7e-35
Identities = 67/101 (66%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Frame = +2
Query: 725 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQ 904
KEHVN+VFIGHVDAGKST+GG I+ LTGMVDKRT+EK EREA+E +ESWYLSWALD+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 905 EERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGG 1024
EER+KGKTV VGRAYFE E L P K + + M+ G
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMING 336
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 87.0 bits (206), Expect = 5e-18
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Frame = +2
Query: 722 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 901
+K H+NVV IGHVD+GKST G ++ G +DKRT+EK+E+EA E + S+ +W LD
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 902 QEERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGGXXKLTRCMVIXX*GNSKG 1078
+ ER++G T+ + FE K ++ + P + F M+ G + C V+ G +
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQ-ADCAVLIIGGGTGE 122
Query: 1079 FE 1084
FE
Sbjct: 123 FE 124
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 86.6 bits (205), Expect = 7e-18
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Frame = +2
Query: 722 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 901
+K H+NVV IGHVD+GKST G ++ G +DKRT+EK+E+EA E + S+ +W LD
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 902 QEERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGGXXKLTRCMVIXX*GNSKG 1078
+ ER++G T+ + FE K ++ + P + F M+ G + C ++ G +
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQ-ADCAILIIGGGTGE 122
Query: 1079 FE 1084
FE
Sbjct: 123 FE 124
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 86.6 bits (205), Expect = 7e-18
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Frame = +2
Query: 722 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 901
+K H+NVV IGHVD+GKST G ++ G +DKRT+EK+E+EA E + S+ +W LD
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 902 QEERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGGXXKLTRCMVIXX*GNSKG 1078
+ ER++G T+ + FE K ++ + P + F M+ G + C ++ G +
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQ-ADCAILIIGGGTGE 122
Query: 1079 FE 1084
FE
Sbjct: 123 FE 124
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 77.4 bits (182), Expect = 4e-15
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Frame = +2
Query: 626 DTQVGNTNPNEDGELTKKIPKKKP------PRVEDTRSKKEHVNVVFIGHVDAGKSTIGG 787
+ ++ N++ +++ KKI K+ P P + + + K V++V GHVD+GKST+ G
Sbjct: 136 EVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLG 195
Query: 788 QIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQEERDKGKTVXVGRAYFEXE-K 964
+IM G ++ R+++K EA + S+ +W LDT +EER +G T+ V FE + K
Sbjct: 196 RIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255
Query: 965 XHLXFLMPLXKKFXSXMMGG 1024
+ P + F S M+ G
Sbjct: 256 IYEIGDAPGHRDFISGMIAG 275
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 34.3 bits (75), Expect = 0.037
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 722 KKEHVNVVFIGHVDAGKSTIGGQI---MSLTGMVDKRTLEKYEREAREKSR 865
KK HVN+ IGHVD GK+T+ I +S G + ++ EK+R
Sbjct: 50 KKPHVNIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKAR 100
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 653 NEDGELTKKIPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSL 802
+E GE +KK+ K ++E+ K + + V+ +G D+GKSTI QI L
Sbjct: 8 SESGE-SKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKIL 57
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 31.5 bits (68), Expect = 0.26
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 737 NVVFIGHVDAGKSTIGGQIMSLTGMVDKRT-----LEKYEREAR 853
N I H+D GKST+ I+ LTG++++ L+K E E R
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVERR 103
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 703 SRRYTKQKRTCKCSIYRTCRCRKVDYWWSNNVTHWNG 813
SR+ ++ +TCKC T RC K +N +WNG
Sbjct: 289 SRKNSEVSKTCKCLQKETIRCNK-----KSNCYNWNG 320
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 29.9 bits (64), Expect = 0.79
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 680 IPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMVDKR 823
+P P ++ + +E++ N + HVD GK+T+ +++ G++ +
Sbjct: 1 MPVIPPEKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSK 49
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 695 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 814
P V + K +V N+ I HVD GKST+ ++ G++
Sbjct: 6 PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 623 LDTQVGNT--NPNEDGELTKKIPKKKPPRVEDTRSKKEHVN 739
L+ + NT NP E+ + T + K PP+ + + + KE++N
Sbjct: 564 LNNRAANTKLNPKEEDKSTVESELKAPPKEKSSETSKEYLN 604
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 695 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 814
P V + K +V N+ I HVD GKST+ ++ G++
Sbjct: 6 PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 756 CPINTTFTCSFLLRVSSTRGGFFFGIFFVNSPSSLGFVFPTC 631
C I + + L T GG +F IF + SPSS F+ C
Sbjct: 92 CLIPVSISLGELASSMPTSGGLYFWIFTLASPSSRAFLCWVC 133
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 27.9 bits (59), Expect = 3.2
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +2
Query: 710 DTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWA 889
D + K+ N+ H+D+GK+T +++ TG + K E R K +
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI------KDIHEVRGKDN----VGAK 101
Query: 890 LDTNQEERDKGKTVXVGRAYFEXEK 964
+D + ER+KG T+ + E+
Sbjct: 102 MDFMELEREKGITIQSAATHCTWER 126
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 773 STIGGQIMSLTGMVDKR---TLEKYEREAREKSRESWYLSWALDTNQE 907
+ + +++ T VDK+ TL K + +K+ +S+Y ++ D NQE
Sbjct: 237 NNLATSLLAQTETVDKKHHETLMKQSQSWSQKAVDSYYFAYPKDRNQE 284
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 719 SKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 835
S++ +N+ IGHV GKST+ I + + K LE+
Sbjct: 19 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELER 57
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 815 DKRTLEKYEREAREKSRESWYLSWALDTNQEERDKGKTVXVG 940
D+ T+EKY+R+A E+ + L L +++ +G V +G
Sbjct: 471 DETTIEKYKRKAAERKQRRKELR-QLKKTKDDEGEGSDVDLG 511
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 680 IPKKKPPRVEDTRSKKEHVNVV-FIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREARE 856
+ KK+P + + T++KKE + V+ + + G + + TG K + + E E E
Sbjct: 183 VQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNPVNENESEDEE 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,909
Number of Sequences: 5004
Number of extensions: 51376
Number of successful extensions: 175
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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