Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F04.2
         (1284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    86   5e-19
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    85   1e-18
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    29   0.087
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    28   0.20 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.20 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
            F2 protein.
          Length = 461

 Score = 86.2 bits (204), Expect = 5e-19
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +2

Query: 722  KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 901
            +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+E+EA+E  + S+  +W LD  
Sbjct: 4    EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63

Query: 902  QEERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGGXXKLTRCMVIXX*GNSKG 1078
            + ER++G T+ +    FE  K ++  +  P  + F   M+ G  +   C V+     +  
Sbjct: 64   KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ-ADCAVLIVAAGTGE 122

Query: 1079 FE 1084
            FE
Sbjct: 123  FE 124


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
            protein.
          Length = 461

 Score = 85.0 bits (201), Expect = 1e-18
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
 Frame = +2

Query: 722  KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 901
            +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+E+EA+E  + S+  +W LD  
Sbjct: 4    EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63

Query: 902  QEERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGG 1024
            + ER++G T+ +    FE  K ++  +  P  + F   M+ G
Sbjct: 64   KAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITG 105


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-alpha
            protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 0.087
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 884  WALDTNQEERDKGKTVXVGRAYFEXEKXHLXFL-MPLXKKFXSXMMGGXXKLTRCMVIXX 1060
            W LD  + ER++G T+ +    FE  K ++  +  P  + F   M+ G  +   C V+  
Sbjct: 1    WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ-ADCAVLIV 59

Query: 1061 *GNSKGFE 1084
               +  FE
Sbjct: 60   AAGTGEFE 67


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 665 ELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 835
           +L+K    K      +  S++  +N+  IGHV  GKSTI   I  +  +  K  LE+
Sbjct: 20  DLSKLDVSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELER 76


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 692 KPPRVEDTRSKKEHVNVVFIGHVDAGKSTI 781
           K P   +++  K H  V  +GHVD GK+T+
Sbjct: 132 KRPLPNESQLIKRHPIVTIMGHVDHGKTTL 161


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 579 HYSHLKKTMNRKKKNWIHK*ETQI 650
           HY   K+  + +  NW HK ET I
Sbjct: 175 HYDRYKEEESNENYNWEHK-ETHI 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,828
Number of Sequences: 438
Number of extensions: 4227
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44063121
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)