Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F03.2
         (1271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    29   1.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   5.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   9.7  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 224 LSGRESSRRVTSVARPVQRPSDVAGRRRPSHPGPRDPSHM 105
           LS R ++  V + A  + RPS    RR PS    R PS++
Sbjct: 373 LSSRTTTGNVRTKAANIVRPSSSINRRPPSSINQRPPSNL 412


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 778 VYKSETFIFCCCFNLSLYSESVFVTYK 858
           VYK +  + C C ++ L  E  F+++K
Sbjct: 804 VYKPQQSVTCVCLSVELSQEKAFMSFK 830


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 708 VLNAKRLTRNANLLSRRS*YLTCSQNK 628
           VL +KRL R++ + S    YLTC  NK
Sbjct: 278 VLISKRLYRSSEVASHTLTYLTCVANK 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,707
Number of Sequences: 5004
Number of extensions: 55012
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)