Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_F02.2
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    62   1e-10
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   2.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   4.2  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    27   5.5  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    27   7.3  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 6/240 (2%)
 Frame = +1

Query: 262 LPRVGAFFKQLQQRGQPVNFVSNXSLRSSANYXAQFKAASIDNGFERLIIPSIAVAEYLK 441
           +P V    K L+  G+ + FVSN S +S   Y  +     I    E +   + + A Y+K
Sbjct: 36  IPGVTDTMKLLRSLGKQIIFVSNNSTKSRETYMNKINEHGIAAKLEEIYPSAYSSATYVK 95

Query: 442 SV---TFNKTVYCVTCTEXKXVLEAHGFKCKEG--PDLGPEYYGEYIQYLEDDEEIGAVV 606
            V     +K V+ +     +  L+  G     G  P L      E ++ +  D  +GAV+
Sbjct: 96  KVLKLPADKKVFVLGEAGIEDELDRVGVAHIGGTDPSLRRALASEDVEKIGPDPSVGAVL 155

Query: 607 FDSDFKINLPKMYRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKRE 786
              D  +   K   A  YL+ P   F+    D   P                      R+
Sbjct: 156 CGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPTN-GKFLPGSGAISYPLIFSTGRQ 214

Query: 787 PVLLGKPGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVGF-NTLLVLTNTTKEE 963
           P +LGKP     E  +      D  +  F+GD +  D+   K      +LLVLT  +KEE
Sbjct: 215 PKILGKPYDEMMEAIIANVNF-DRKKACFVGDRLNTDIQFAKNSNLGGSLLVLTGVSKEE 273


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 879 TDKKNSTGIGDAGSLHSEFTENPSWLPKQHGLSFHF 772
           T+ +NS+     GS+HS   E+P+ L +QH  SF F
Sbjct: 40  TNSQNSS----VGSVHSPILESPTSLNRQHRNSFSF 71


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 900 YILGDHVTDKKNSTGIGDAGSLHSEFTENP 811
           Y   +++T     +GI DA SL S+FT +P
Sbjct: 147 YTSSNNMTSTSRMSGIHDALSLQSDFTRSP 176


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 793 LLGKPGRVFGEFAMKRAGITDPSRVLFIGD 882
           L+ KP     E  M+ AG+TD  + +F+ D
Sbjct: 145 LIAKPMPEMYERVMREAGVTDKDKCIFVDD 174


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 847 ITDPSRVLFIGDMIAQDVSLGKAVG 921
           ++  S++LFIGD +  D++L   +G
Sbjct: 144 VSSASQILFIGDRLLTDITLANIMG 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,712
Number of Sequences: 5004
Number of extensions: 66601
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)