Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_F02.2
(1275 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 88 1e-17
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 47 4e-05
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 33 0.48
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 30 4.5
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 5.9
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 88.2 bits (209), Expect = 1e-17
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 11/237 (4%)
Frame = +1
Query: 292 LQQRGQPVNFVSNXSLRSSANYXAQFKAASIDNGFERLIIPSIAVAEYLKSVTF--NKTV 465
L+ +G+ + FV+N S +S Y +F+ ++ E + S A A YL+S+ F +K V
Sbjct: 110 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKV 169
Query: 466 YCVTCTEXKXVLEAHGFKCKEGPDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDF 621
Y + LE GF+ GP G + G Y+++ +D I GAVV D
Sbjct: 170 YVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDR 229
Query: 622 KINLPKM-YRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLL 798
N K+ Y + + P LFI D + + K+EP+++
Sbjct: 230 YFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVV 289
Query: 799 GKPGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVGFNTLLVLTNTTKEEML 969
GKP ++ K+ GIT S++ +GD + D+ G+ G TLLVL+ T +ML
Sbjct: 290 GKPSTFMMDYLAKKFGITT-SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQML 345
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 46.8 bits (106), Expect = 4e-05
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +1
Query: 625 INLPKMYRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGK 804
+N +Y ++ + P LFI D M V++EP+++GK
Sbjct: 192 VNRLLLYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGK 251
Query: 805 PGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVGFNTLLVLT 945
P +F +K + + SR+ +GD + D+ G+ G TLLVL+
Sbjct: 252 PSSFLMDFLLKSFNL-ETSRMCMVGDRLDTDILFGQNTGCKTLLVLS 297
Score = 42.3 bits (95), Expect = 8e-04
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 292 LQQRGQPVNFVSNXSLRSSANYXAQFKAASIDNGFERLIIPSIAVAEYLKSVTFN--KTV 465
L++ G+ + FV+N S +S Y +F+A ++ E + S A A +LK F+ K V
Sbjct: 50 LRKMGKKLVFVTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKV 109
Query: 466 YCVTCTEXKXVLEAHGFKCKEGP 534
Y V L GF+C GP
Sbjct: 110 YVVGEDGILEELRLAGFECLGGP 132
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 33.1 bits (72), Expect = 0.48
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +1
Query: 781 REPVLLGKPGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVGFNTLLV 939
+ P+L KP E A++ A + DP + +F D + ++++ GKA GF+T++V
Sbjct: 578 KSPILC-KPSIEAMEAAIRIANV-DPEKTIFFDDSV-RNIASGKAAGFHTVIV 627
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 426 HCDRWNDQALKAVVDAGCFELSXIICAGSKAVIGN 322
HC + +D+ LKAV+ GC L ++ AG + + N
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDN 174
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 29.5 bits (63), Expect = 5.9
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 741 DGSFYRSGYGRSETRARAAWE--ARKGFR*IRYEASRHHRSQSSSFYR*HDRPRCISRES 914
DG RSG GRS +R+R+ + +R R R+ SR RS+S S R + R R SR
Sbjct: 585 DGRSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSR-TRSRSRSRSRSYTRNRRASRSR 643
Query: 915 S 917
S
Sbjct: 644 S 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,125,868
Number of Sequences: 37544
Number of extensions: 448811
Number of successful extensions: 974
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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