Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_E23.2
(1223 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 31 0.33
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 4.0
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 4.0
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 5.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 27 7.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 7.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 9.3
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 26 9.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 9.3
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 31.1 bits (67), Expect = 0.33
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 351 EQSEXDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHLATT 530
E E D K+ + EHL++ + E++ Q+ KEKY K+N +++ + R L+T
Sbjct: 85 EDEEAD--KIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFADLK--RGLSTL 140
Query: 531 QPDEW 545
++W
Sbjct: 141 TDEDW 145
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 675 KELKEGTLSISEDVRAHFLKFSERTIPPLNRNSVKKIDVTPEEKIGEFENIIRRCAAKEN 854
KE S SED + + + + + P + D + KIG ++ R+ A ++
Sbjct: 1432 KESLSKIFSDSEDCNSESIHYVLKLVKPSKFFPLFYSDSEEKGKIGALNDMTRKAAMEQK 1491
Query: 855 SDQKTFKQDYNATK 896
+D +T + YN K
Sbjct: 1492 ADAETLR--YNLAK 1503
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 366 DFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHL 521
DF + + Y HL L E HQI+ YF +N+ + E ++HL
Sbjct: 129 DFVETEDFY--HLVMELAEGGELFHQIVNFTYFSENLARHIIIQVAEAVKHL 178
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 183 TARXRHLCPSAKIIVRNLRNXMXLASFGPNPGLDKRI 293
T + H CPS+ +++ R L +FG P D +
Sbjct: 35 TRKFHHACPSSSKVLKYFRITGCLINFGKQPANDHHL 71
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 7.0
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 672 WKELKEG--TLSISEDVRAHFLKFSERTIPPLNRNSVKKIDVTPEEKIGEFENII 830
WKE E I+ DV F+ RT+P L + + DV EE + NII
Sbjct: 509 WKESLEAKAVAYINVDVAVSGDTFTARTVPGLKKVIQRAFDVANEEDEMKAANII 563
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 872 KSFL--V*IFFSSTSSNDIFKFSYFFFWCNIYFLY*VPIKRRNSSFR 738
KSFL V +F S + FS+ F W + + V ++ RN F+
Sbjct: 3720 KSFLSVVVVFQHFISLKKSYSFSFNFIWSTFHQMLNVVLENRNQDFK 3766
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 378 VGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPN 482
+G +Y +HL L + +Q ++I + QN PN
Sbjct: 393 IGMLYRKHLQIILQHRQQQLNKIQNARMNSQNAPN 427
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 911 KNGKSPRDYKRVTLEELAQKIQTRLQTGQMLMFPINNSN 1027
+N K Y+ V +EE Q ++ L+TG++ I+N N
Sbjct: 131 RNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFN 169
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 9.3
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +3
Query: 384 EVYNEHLNE--TLMGKYEQRH----QIIKEKYFKQNMPNLLTWSEKEQIRHLATTQPDEW 545
+++N ++ + TL+GK Q ++ KE F Q+ L E E++RHLAT+ +++
Sbjct: 347 DIHNVNIKQITTLIGKMSQVQIECKRLRKENLFLQSERTHLL-RELEELRHLATSAKEDF 405
Query: 546 TP-EKL 560
EKL
Sbjct: 406 VKVEKL 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,496
Number of Sequences: 5004
Number of extensions: 66206
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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