Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E21.2
         (1254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    65   2e-11
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   5.4  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    27   5.4  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   7.2  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    26   9.5  

>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit Sec62
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 30/101 (29%), Positives = 52/101 (51%)
 Frame = +3

Query: 726  IRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVFGTITVCMFPLWPATVRIGVYYL 905
            + L+++  Q F D +  YVW+Y+P P       +L     + + +FPLWP  +R G +YL
Sbjct: 106  VELQINRNQDFQDDMH-YVWLYEPLPKRVMALAVLFALVVLALVLFPLWPMFMRKGAWYL 164

Query: 906  SIAAXAFLVMIIGLTVLRVVVFCLVWILTXSRHHLWLLXTL 1028
            S+     + +   L +LR  +FC+  ++   R  +WL   L
Sbjct: 165  SMGGLGVIGLFFVLVILRFFLFCITAVIV--RPGIWLFPNL 203


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 428 RYKGCRCLVDFKMGDRQESSVHHKNRSDS 514
           R K CR ++  +   R + S+H + RS S
Sbjct: 59  RIKACRTIISAREQQRTQHSIHRRERSSS 87


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 265 QWLIKERLKNAKMTSENLQSL 327
           QW+ K + +NA   +ENLQ L
Sbjct: 284 QWIAKRKAENANRAAENLQPL 304


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 435 KAVDALLTSKWATGKNPAFTTRIEVTHYLHRMLLHKLFHRAKKV 566
           KAV+ L + +W  G+ P+F   +E T     M +  +  R +KV
Sbjct: 268 KAVNELQSWEWTFGQTPSFKQHLESTELSVSMDISVVHGRLEKV 311


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 443 YSLCTCEIFHVVI*KFCLLRWYIRFEPF 360
           YS+ +   F V++  FCL RW + +  F
Sbjct: 576 YSVISLVAFFVIVQIFCLARWNLGYNDF 603


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +1

Query: 262 IQWLIKERLKNAKMTSENLQSLRS-----QRAKSTQSRNGSK 372
           ++ ++KE L   K  S +LQSL+S     Q+ ++  SR G K
Sbjct: 111 LEAVLKEELHQIKKFSSDLQSLKSSMGERQKQQAAMSRRGKK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,973,567
Number of Sequences: 5004
Number of extensions: 75609
Number of successful extensions: 212
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)