Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E21.2
         (1254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454...    52   1e-06
12_02_0352 - 17862577-17863528,17864076-17864827                       31   1.4  
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           31   2.5  
04_04_0245 - 23872901-23872906,23873567-23873600,23874497-238747...    31   2.5  
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    30   4.4  
02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141     29   5.8  

>02_03_0012 - 13940583-13940853,13942281-13942509,13945275-13945476,
            13945961-13946278,13947321-13947419
          Length = 372

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
 Frame = +3

Query: 732  LEMHMEQVFLDTVDAYVWIYDPKP--WYYWVCGILVVFGTITVCMFPLWPATVRIGVYYL 905
            LE+H EQVF +    + W++  +   W   +  +  +F  + VC+FP++P   +I V Y 
Sbjct: 135  LEIHREQVFTENDGFFAWMFLKRRTLWQTILSFVWPLFA-LAVCLFPVYPYQCKIVVLYS 193

Query: 906  SIAAXAFLVMIIGLTVLRVVVFCLVWILTXSR 1001
               A  F+V I+   +LR  +F ++W+L   R
Sbjct: 194  CAGALLFIVSIL---LLRAAIFGILWVLLGKR 222


>12_02_0352 - 17862577-17863528,17864076-17864827
          Length = 567

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 1004 MPGXRQDPDQTEDDHXEHGQPYYHHEES 921
            +P    DP++ +DD  +HG  Y HH +S
Sbjct: 372  IPHDTPDPEEEDDDGEKHGGSYGHHHQS 399


>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 770 RCLR-LDLRSEALVLLGLRDSGRLWNDHSLHVPTLAGHC*DRSILPEHSGG 919
           RC+  LD     L+LL L  +  L + + L +P   GH     +LP+ +GG
Sbjct: 445 RCIENLDTEELVLLLLFLHRNATLPSGYPLGMPVPVGHGHGHGVLPDRAGG 495


>04_04_0245 -
           23872901-23872906,23873567-23873600,23874497-23874765,
           23876691-23876741
          Length = 119

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 335 NERRVRSREMAQSECTNEEDKISKSPRGIFHR 430
           NE+ V  R MA+ E  +E +  + SP G+ HR
Sbjct: 50  NEQEVDKRVMAKGELADERESTATSPEGMGHR 81


>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 908 HSGGGFPRDDNRADRAPXGRLLSGLDPD 991
           H GGG PRD   AD  P GR  +G  P+
Sbjct: 115 HGGGGDPRDRALADGNPDGRGRAGGSPE 142


>02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141
          Length = 352

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 329 EANERRVRSREMAQSECT---NEEDKISKSPRGIFHRYKGCRCLVDFKMGDRQESSVHHK 499
           + + R +R R++ Q+E +   N     S S  G    YKG     D+K G R+E +V  +
Sbjct: 106 DRDARAIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSE 165

Query: 500 NRSDS 514
               S
Sbjct: 166 KAGGS 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,396,415
Number of Sequences: 37544
Number of extensions: 513916
Number of successful extensions: 1325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)