Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E21.2
         (1254 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    31   0.021
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    31   0.021
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   1.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   2.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 31.1 bits (67), Expect = 0.021
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 575 AHRDLLGPVEEFMQKHTMQVMSHFDSCGE-RWILAG 471
           +H  L  PV+EF ++ T+Q+    ++ G  RW LAG
Sbjct: 176 SHALLKDPVKEFWERRTLQISDGIENIGSIRWELAG 211


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 31.1 bits (67), Expect = 0.021
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 575 AHRDLLGPVEEFMQKHTMQVMSHFDSCGE-RWILAG 471
           +H  L  PV+EF ++ T+Q+    ++ G  RW LAG
Sbjct: 229 SHALLKDPVKEFWERRTLQISDGIENIGSIRWELAG 264


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 950 GQPYYHHEESXRRYAQV---IYSYPNSGRPEWE 861
           G P +  E+  R YAQ+    Y YP+   PEW+
Sbjct: 108 GYPPFWDEDQHRLYAQIKTGSYDYPS---PEWD 137


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 284 LSFISHCMLNLPTYHKTTKPSFRISD 207
           LS +  C++  P+ H  T+PSF +SD
Sbjct: 7   LSLLITCLICSPSVHCGTRPSF-VSD 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,621
Number of Sequences: 438
Number of extensions: 5425
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42862491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)