Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E19.2
         (1434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       34   0.24 
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    30   5.2  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 34.3 bits (75), Expect = 0.24
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 1201 PPXXGEXFFXPPXNFFXXKTPPPPXFXFFXXXXXXTPPPPF 1079
            PP     F  PP  F    +PPPP F F        PPP F
Sbjct: 235  PPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAF 275


>12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,
            2195479-2195505,2195794-2196024,2196523-2196692,
            2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 1084 GGGGXXFXXXKKXKXXGGGGFFX*KNXGGGXKXXPXXXGGAP 1209
            GGGG      K+ +  GGG     KN GGG +      GGAP
Sbjct: 278  GGGGKKDAGGKQNQGGGGGNG---KNGGGGGQPNNAKGGGAP 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,947
Number of Sequences: 37544
Number of extensions: 316491
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4548026336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)