Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E17.2
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    29   1.9  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    29   1.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   3.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   7.6  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 487 VDEIAKAVISSSNALPIPQYIDVYVAVGQLVGDNDIGVANKAILITSNLPEEAYTKVL-- 660
           VD I + +++    +     +D+  ++G+ + DN+I V  KA+L+ S    E     L  
Sbjct: 24  VDRIVEEIVTDRMGI-----VDLVTSIGEYLTDNNISVRAKAVLLLSQTLGELPKDRLPA 78

Query: 661 EEMKILLQY 687
           + + +LLQ+
Sbjct: 79  KHVSVLLQF 87


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = -2

Query: 455 RNKY--MKLPVKLLITSP--GENFSKHSVSTSHIKSTRCLSKMLKHWSILDNPTSRIVSE 288
           +NKY  +K+   L+  S    E FS   ++T H K  +C  +M + W + D  T     +
Sbjct: 178 QNKYHLIKILTSLIEESKRNAEKFSHVPLNTGHWKYKKCDKRMPQEW-LADATTLTSKKK 236

Query: 287 ISVGAETNNVL 255
            ++G +++N +
Sbjct: 237 TTIGKQSHNTV 247


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 598 RLYHYHQQADQQLHTHQYTVVLGGH 524
           R+Y Y Q+ D++ +TH   V+ G H
Sbjct: 232 RIYKYLQEYDEKTNTHSLIVLCGDH 256


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
 Frame = +1

Query: 253  LKTLLVSAPTEISETILEVGLSKILQCFNIF--------DRHLVDLICEVLTLCFEKFS- 405
            L T+L      I    L +GL+ +  CFN F         R L+D    V   CF   + 
Sbjct: 965  LITILEKCDNPIIRNNLVIGLADLTVCFNHFIDEISEYLYRRLMDEESSVKKTCFMTLAF 1024

Query: 406  ---PGEV-IKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSSNALPIPQYIDVYVAVGQ 573
                G++ +K   G     L  E+A +  LA   +     ++ +      +ID++  + +
Sbjct: 1025 LILAGQIKVKGQLGIMARSLEDEDARISDLA--RMFFTDFAAKDNSVYNNFIDIFSVLSR 1082

Query: 574  LVGDNDIGVAN-KAIL--ITSNLPEEAYTKVLEE 666
               + D   A  K I+  +TS + +E +TK L E
Sbjct: 1083 SAEEQDEDDAKFKRIIRFLTSFIEKERHTKQLAE 1116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,289,290
Number of Sequences: 5004
Number of extensions: 83426
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)