Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E17.2
         (1320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654...    30   4.7  
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271           29   6.2  

>03_02_0938 -
           12563250-12563681,12564098-12564514,12565333-12565477,
           12565574-12565722,12565836-12565948,12566423-12566458,
           12566558-12566816
          Length = 516

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 415 VIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSS--NALPIPQYIDVYVAVGQLVGDN 588
           ++K F GN  +      A  R++      K   +SS  N++P    +D   +      D+
Sbjct: 229 ILKGFEGNHPFHNYTARAKYRKVLAGRHRKVKGASSAVNSMPTEMSLDQSSSDDGTTSDH 288

Query: 589 DIGVANKAILITSNLPEEAY 648
           D    N + +I S++PE++Y
Sbjct: 289 DEEDLNSSSIIGSSVPEDSY 308


>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
          Length = 450

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 529 LPIPQYIDVYVAVGQLVGDNDIGVANKAILITSNLPEEAYTKVLEEMKILLQYSSSS 699
           +P P  IDV + V       D G++N A+ +  +    +YT  L  ++  L Y +SS
Sbjct: 254 MPEPVIIDVELKVKGTTESEDKGLSNLAVPLLCDDTSYSYTSKLSTLEFRLGYITSS 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,500,105
Number of Sequences: 37544
Number of extensions: 469493
Number of successful extensions: 1038
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4132076460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)