Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E17.2
         (1320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    31   2.4  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    31   2.4  
AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical ...    30   3.2  
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    30   4.2  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    30   4.2  
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    29   9.7  

>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 343 FDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVD 492
           + R LVD+ICE++T+  +K   G   + FT      +  +  H+   A++
Sbjct: 716 YTRQLVDVICEIVTVYTQKIISGLEAEGFTQELQAFIPSQLLHLLCAAIN 765


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 343 FDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVD 492
           + R LVD+ICE++T+  +K   G   + FT      +  +  H+   A++
Sbjct: 700 YTRQLVDVICEIVTVYTQKIISGLEAEGFTQELQAFIPSQLLHLLCAAIN 749


>AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical
           protein K12B6.1 protein.
          Length = 881

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +1

Query: 718 VIINISIKSYDLFKICLELGYIDIMVQEIQ---SLDVLYQLNILE-LMSTLAIKPYGINY 885
           + I  S+ +Y     CLE  + D++ Q+I+   ++ +  Q N  + ++    +K  G+NY
Sbjct: 551 MFITKSMNNYHTEIKCLEQEF-DLLTQDIRFETAVKLAQQQNTRKNIIYKTNMKLGGLNY 609

Query: 886 LLNSGAMDKXVTVVIDLKTSPVGGI 960
            L SG       ++I  +TS  GG+
Sbjct: 610 ELRSGVFSNSKRLIIGFETSQRGGL 634


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical protein
            F13A7.10 protein.
          Length = 254

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 1034 RIFFXNLLXEIMSXTSNNFM*PGINIPPTGEVFKSITTVTXLSIA 900
            R+++   L EI    S+NF  PG   P   + FK+IT +  ++ A
Sbjct: 187  RVYWLTFLLEIFPLPSDNF--PGPGYPKLSQWFKAITAIPEVAAA 229


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 609 FVSNAYIIITNKLTNSYIHINILWYWEGIGA*YHCFSNLIYSKSTNMCI 463
           FVS A ++  +++T+ Y+H+N   YW  I   + C  +++YS   N  I
Sbjct: 120 FVS-AVVLSVHRITSVYLHMNNDKYWNLIFI-FFCLGSILYSCICNSLI 166


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 589 HYHQQADQQLHTHQ 548
           HYHQQ  QQ H HQ
Sbjct: 47  HYHQQQQQQQHAHQ 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,665,294
Number of Sequences: 27780
Number of extensions: 457500
Number of successful extensions: 1098
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3694370690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)