Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E15.2
         (1351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    28   3.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   7.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   7.9  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 744 NGGLMDNAFKYIKDNGGIDTEQTY----PYEGVDDKCR-YNPKNTGAEDVGFVDIP 896
           +G ++DN     KDN G+D +Q +     Y GV  K     PK   + +V F  +P
Sbjct: 229 DGTILDNLVTLRKDNTGLDIKQLFIGSEGYLGVITKLSVICPKRPSSTNVAFFGVP 284


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -1

Query: 1084 STPXXSVP*PPTXTPXSRSVEEHSSSL*TPLE*SXKLVCEASMXTETGPTV---ATASIS 914
            ST   S P PP  T  + +      S  T    S  +    +  T   PTV   +T+S S
Sbjct: 309  STSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTS 368

Query: 913  FCSSPSGMSTKPTSSAPV 860
                P+  S+  TSS+P+
Sbjct: 369  TPPPPASTSSTGTSSSPL 386


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 610 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 524
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 762 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDVGFVDIPEGDEQKLMEAVATVG 941
           N ++Y+KD+  I        +GVDDK  +       + +GF D    D   ++  +  +G
Sbjct: 293 NDYRYLKDSVHI-------IDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMG 345

Query: 942 PVSVXIDAS 968
            + V  D S
Sbjct: 346 NIDVGADRS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,912,861
Number of Sequences: 5004
Number of extensions: 76507
Number of successful extensions: 239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 743204572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)