Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E14.2
         (1321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    59   2e-09
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   5.8  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   7.6  

>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
 Frame = +3

Query: 573  METPHQNHIDKADFDHVYEPAEDSFLLIDAIEKDLENLR---SRNPALCLEVGSGSGVVV 743
            + TP  + +   +F  VYEPAED+F L+DA+EKD + LR        L  E+G GSG   
Sbjct: 2    LSTPVTSQLRLKEFQDVYEPAEDTFALLDALEKDAKKLRQMAEMKNLLTAEIGCGSGCAS 61

Query: 744  TAFGMAFPSTFCI---STDINFRACIMSKKTAEYNKVIF---DSVRMDLASSF-----AX 890
            +           I    +DI+  AC  SK TA  N+ ++   + + + + +SF       
Sbjct: 62   SFLKSGILKNKPIVHFMSDISNSACRASKITALNNRELYKDDNGLFITVQTSFLDGIRLG 121

Query: 891  XXXXXXXXXXXYVVTDSEE--CGGXDITXSWAGGVXGXK*QXDXXK*YKEI-X*DGTFYL 1061
                       YV T+ EE       I  +WAGG  G           K+I   DG FY+
Sbjct: 122  NGVDILIFNPPYVPTEFEEIPSEAATIASAWAGGTDGMDVTSTLLNQLKDILSQDGVFYM 181

Query: 1062 L 1064
            +
Sbjct: 182  V 182


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 711 LEVGSGSGVVVTAFGMAFPSTFCISTDINFRACIMSKKTAEYNKVIFDSVRMDL 872
           LE+GSG G+V  +    +P      TD       M K   +    + +++  D+
Sbjct: 187 LELGSGCGIVGISIASKYPRALVSMTDTEDAIEFMEKNVEKNKSAMSNNITSDI 240


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 600  DKADFDHVYEPAEDSFLLIDAIEKDLENLRSRNP 701
            DK D D +YEP  ++  L+ A  + L  LR +NP
Sbjct: 911  DKIDLD-LYEPLPENSYLVAAELRVLRALRHKNP 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,861
Number of Sequences: 5004
Number of extensions: 59995
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)