Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E14.2
         (1321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016662-8|AAB66061.2|  234|Caenorhabditis elegans Hypothetical ...    91   2e-18
Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical pr...    32   1.0  
Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical pr...    31   1.8  

>AF016662-8|AAB66061.2|  234|Caenorhabditis elegans Hypothetical
           protein C33C12.9 protein.
          Length = 234

 Score = 91.1 bits (216), Expect = 2e-18
 Identities = 58/146 (39%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
 Frame = +3

Query: 567 LTMETPHQNHIDKADFDHVYEPAEDSFLLIDAIEKDLENLRSRNPALCLEVGSGSGVVVT 746
           ++M TP Q  +       VYEPAED+FLLIDAIEKD++ +RSR+P L LE+G GSGVV T
Sbjct: 14  MSMPTP-QYRLQAIRAHDVYEPAEDTFLLIDAIEKDIKEIRSRDPKLVLEIGCGSGVVST 72

Query: 747 AFGMAF-PSTFCISTDINFRACIMSKKTAEYNKVIFDSVRMDLASSF--AXXXXXXXXXX 917
               A   +   ++TD+N  A  ++ +TA+ N +  D VR DL +               
Sbjct: 73  FVNQALGGNVTSVATDLNPHALDVTLETAKLNDIKIDVVRTDLFAGLENLLGKVDVLLFN 132

Query: 918 XXYVVTDSEECGGXDITXSWAGGVXG 995
             YV TD E     ++T  +AGG  G
Sbjct: 133 PPYVPTDEEPKSNIELT--YAGGRTG 156


>Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.4 protein.
          Length = 550

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 964 ISXPPHSSESVTTYGGLNIMISNILSANELARSILTESNITLLYSAVFFDIMHALKLMSV 785
           +S P H     T YGGL +  ++ +S   + R+++T   +  + +    D+     L ++
Sbjct: 189 VSSPEHYETCNTLYGGLQLNSTSNISNLPMLRNVITMKGLINIENTSIQDLSFFQSLTTI 248

Query: 784 LIQNVEGNAI 755
             +NVE   I
Sbjct: 249 KYRNVESVVI 258


>Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical
           protein K10D11.2 protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 756 MAFPSTFCISTDINFRACIMSKKTAEYNKVIFDSVRMDLAS 878
           + FP+T    +D+  RA +++     + K IFDSV + L S
Sbjct: 129 LPFPTTVSEYSDVTERATVLNATETTFTKSIFDSVGLSLLS 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,735
Number of Sequences: 27780
Number of extensions: 352679
Number of successful extensions: 942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3694370690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)