Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E13.2
         (1341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    30   0.63 
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   4.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   7.8  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 297 LPYTAVYSPATRQQDTVSATRRTQATNGALQKGVH**SRERLSWLYQKYGKVLYGSLPKG 476
           +P    YS A +     + T  +    G L K V   S E L +L+Q +G+++Y  +P G
Sbjct: 282 MPPVGFYS-AAQPVPQFADTANSTVFVGGLSKFV---SEEELKYLFQNFGEIVYVKIPPG 337

Query: 477 HQRTGISIRRRQPSKPSLRCKQ--PNGRRRL 563
                +    RQ ++ ++   Q  P G  R+
Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRI 368


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 413 RKT*LAISKVWKSTLWESPEGTSENWHFNTP 505
           +K  + ISKVW+S L E P  T  N  ++ P
Sbjct: 132 KKVKVDISKVWRSILAEKPRVTRFNIQWDNP 162


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +1

Query: 283 LASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRV--FTDSQ-----EKDLVGYIKS 441
           + S+   +  +  Q  AS+  Y  P   K LMG  ++V  F   Q     EK L  ++ +
Sbjct: 12  IPSKGISLVAARFQSTASRASYVTPPYEK-LMGKLQQVRKFLPGQKLTLAEKVLYSHLVN 70

Query: 442 MEKYFMGVSRRDIR 483
            E+ F GVS  DIR
Sbjct: 71  PEESFSGVSPSDIR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,988,013
Number of Sequences: 5004
Number of extensions: 79511
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 737243038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)