Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E13.2
         (1341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0288 + 16416409-16416603,16417584-16417635,16417842-164178...    31   1.6  
11_06_0235 + 21588212-21589029,21589426-21591358                       30   3.6  
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890...    29   8.3  

>09_04_0288 +
           16416409-16416603,16417584-16417635,16417842-16417890,
           16418354-16418497,16418730-16418783,16418883-16418948,
           16419174-16419252,16419390-16419467
          Length = 238

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 459 GSLPKGHQRTGISIRRRQPSKPSLRCKQPNGR 554
           GSL    + + +S RRR P+ P +RC Q  G+
Sbjct: 34  GSLGDASRVSSVSFRRRPPASPLVRCSQDPGK 65


>11_06_0235 + 21588212-21589029,21589426-21591358
          Length = 916

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 986 GNLIFELGSSYFVNIIVKS-LQPIHYIILLFVFN 888
           GN I+E+G SYF  +I K  +QP+ Y I    F+
Sbjct: 456 GNKIYEVGESYFTELINKGMIQPMGYDIYSDTFD 489


>04_04_1272 -
           32288142-32288456,32288538-32288670,32288780-32289020,
           32289124-32289340,32289557-32289681,32290873-32292157
          Length = 771

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 346 YQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMG 462
           ++ PD+P P  G YRRV   S   D+V +   +E+Y  G
Sbjct: 183 WRSPDDPSP--GAYRRVLDTSGIPDVVLWQDGVERYRSG 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,906,523
Number of Sequences: 37544
Number of extensions: 483171
Number of successful extensions: 1135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4213554024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)