Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E13.2
         (1341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    31   2.4  
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    31   2.4  
AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    29   5.6  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   7.5  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    29   7.5  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   7.5  

>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 265 GKLGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLV 426
           GKLG + AS  Y IPRSTL+ +  K+  +     K   G       ++++K  V
Sbjct: 169 GKLGTRRASVVYGIPRSTLRNKIYKLEAEGAIPSKVRRGKIAARRAEAEQKRCV 222


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 265 GKLGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLV 426
           GKLG + AS  Y IPRSTL+ +  K+  +     K   G       ++++K  V
Sbjct: 169 GKLGTRRASVVYGIPRSTLRNKIYKLEAEGAIPSKVRRGKIAARRAEAEQKRCV 222


>AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical
           protein C09E8.1b protein.
          Length = 756

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 236 WQRLSPLSSQVSWATSWHPGPTIY 307
           +++L+P+S+ + WA +WH    +Y
Sbjct: 61  FRKLAPISAGIGWALTWHVAEKLY 84


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 236 WQRLSPLSSQVSWATSWHPGPTIY 307
           +++L+P+S+ + WA +WH    +Y
Sbjct: 61  FRKLAPISAGIGWALTWHVAEKLY 84


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
 Frame = +1

Query: 310 RSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIREL 489
           + T  R +  IR     +   L   Y RV TD+++  ++G ++  +K    ++ + ++E+
Sbjct: 709 KETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK--ILGELEHAQKA-AHLAEQQLKEI 765

Query: 490 A-----FQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRN 588
                 +Q  +D H  H FD+  ++  E   R  L++N
Sbjct: 766 KIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKN 803


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
 Frame = +1

Query: 310  RSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIREL 489
            + T  R +  IR     +   L   Y RV TD+++  ++G ++  +K    ++ + ++E+
Sbjct: 782  KETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK--ILGELEHAQKA-AHLAEQQLKEI 838

Query: 490  A-----FQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRN 588
                  +Q  +D H  H FD+  ++  E   R  L++N
Sbjct: 839  KIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKN 876


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
 Frame = +1

Query: 310  RSTLQRRASKIRYQQPDEPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIREL 489
            + T  R +  IR     +   L   Y RV TD+++  ++G ++  +K    ++ + ++E+
Sbjct: 782  KETQIRYSDDIRRNIQKDLDDLREKYDRVHTDNEK--ILGELEHAQKA-AHLAEQQLKEI 838

Query: 490  A-----FQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRN 588
                  +Q  +D H  H FD+  ++  E   R  L++N
Sbjct: 839  KIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKN 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,595,792
Number of Sequences: 27780
Number of extensions: 429154
Number of successful extensions: 870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3767217436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)