Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_E12.2
(1300 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068004-1|AAH68004.1| 145|Homo sapiens selenoprotein M protein. 87 1e-16
BC030236-1|AAH30236.1| 145|Homo sapiens selenoprotein M protein. 87 1e-16
BC013421-1|AAH13421.1| 145|Homo sapiens selenoprotein M protein. 87 1e-16
AY043487-1|AAK95397.1| 145|Homo sapiens selenoprotein SelM prot... 87 1e-16
BC016359-1|AAH16359.3| 165|Homo sapiens 15 kDa selenoprotein pr... 44 0.001
BC005294-1|AAH05294.3| 165|Homo sapiens 15 kDa selenoprotein pr... 44 0.001
AL121989-1|CAC04186.1| 162|Homo sapiens dJ604K5.1 (15 kDa selen... 44 0.001
AF288992-1|AAG31557.1| 162|Homo sapiens 15 kDa selenoprotein pr... 44 0.001
AF288991-1|AAG31556.1| 162|Homo sapiens 15 kDa selenoprotein pr... 44 0.001
AF267982-1|AAF78966.1| 162|Homo sapiens 15 kDa selenoprotein pr... 44 0.001
AF051894-1|AAC15478.1| 162|Homo sapiens 15 kDa selenoprotein pr... 44 0.001
>BC068004-1|AAH68004.1| 145|Homo sapiens selenoprotein M protein.
Length = 145
Score = 87.0 bits (206), Expect = 1e-16
Identities = 42/88 (47%), Positives = 53/88 (60%)
Frame = +3
Query: 225 LSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELILLGEGDHELE 404
LS + AR+E C G LNRL EVK FV D P Y + +K + GA PEL+LLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 405 RLPLSHLNQEQCNELIQSKGFSNNKKSD 488
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>BC030236-1|AAH30236.1| 145|Homo sapiens selenoprotein M protein.
Length = 145
Score = 87.0 bits (206), Expect = 1e-16
Identities = 42/88 (47%), Positives = 53/88 (60%)
Frame = +3
Query: 225 LSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELILLGEGDHELE 404
LS + AR+E C G LNRL EVK FV D P Y + +K + GA PEL+LLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 405 RLPLSHLNQEQCNELIQSKGFSNNKKSD 488
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>BC013421-1|AAH13421.1| 145|Homo sapiens selenoprotein M protein.
Length = 145
Score = 87.0 bits (206), Expect = 1e-16
Identities = 42/88 (47%), Positives = 53/88 (60%)
Frame = +3
Query: 225 LSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELILLGEGDHELE 404
LS + AR+E C G LNRL EVK FV D P Y + +K + GA PEL+LLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 405 RLPLSHLNQEQCNELIQSKGFSNNKKSD 488
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>AY043487-1|AAK95397.1| 145|Homo sapiens selenoprotein SelM
protein.
Length = 145
Score = 87.0 bits (206), Expect = 1e-16
Identities = 42/88 (47%), Positives = 53/88 (60%)
Frame = +3
Query: 225 LSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELILLGEGDHELE 404
LS + AR+E C G LNRL EVK FV D P Y + +K + GA PEL+LLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 405 RLPLSHLNQEQCNELIQSKGFSNNKKSD 488
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>BC016359-1|AAH16359.3| 165|Homo sapiens 15 kDa selenoprotein
protein.
Length = 165
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 78 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 137
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 138 GNIAEELSILKWNTDSVEEFLSEK 161
>BC005294-1|AAH05294.3| 165|Homo sapiens 15 kDa selenoprotein
protein.
Length = 165
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 78 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 137
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 138 GNIAEELSILKWNTDSVEEFLSEK 161
>AL121989-1|CAC04186.1| 162|Homo sapiens dJ604K5.1 (15 kDa
selenoprotein) protein.
Length = 162
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF288992-1|AAG31557.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF288991-1|AAG31556.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF267982-1|AAF78966.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF051894-1|AAC15478.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 213 SEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELILLGEG 389
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 390 DHELERLPLSHLNQEQCNELIQSK 461
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,935,986
Number of Sequences: 237096
Number of extensions: 1939974
Number of successful extensions: 3069
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18715718200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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