Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E12.2
         (1300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    33   0.58 
Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical pr...    29   9.5  

>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 168 TLLSVVXFCAVFVLSSEYELSDIVSARIEXCRGCSLNRLPEVKRFVMDDAPNY--DRVEV 341
           TLL+    C +     E++     +A +E C  C+L R P+V+ FV  D       +V+V
Sbjct: 54  TLLTDCLQCCI--KEEEFKHEKYPTAILEVCE-CNLARFPQVQAFVHKDMARQFGGKVKV 110

Query: 342 KFISGAPPELIL 377
           K + G  P++ L
Sbjct: 111 KHVRGVRPQVAL 122


>Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical
           protein F32A7.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 4   HTRPTTRASVXLSPPCPQAIGCP 72
           HT PT   +  +  PCP  +GCP
Sbjct: 389 HTVPTMLPTATVLAPCPHDLGCP 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,749,758
Number of Sequences: 27780
Number of extensions: 311576
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)