Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E11.2
         (1341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    31   0.36 
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.5  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    29   1.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   4.5  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   5.9  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    27   7.8  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
 Frame = +3

Query: 498  AKXWAPKFNYISPVWLQIKXQSPNIYIITGLHDVDHAWMKSVRQKGARNNIKIL----PR 665
            A+ W    NY    W     +S  + ++ G+ +VD+ W +   Q+  ++N ++L     +
Sbjct: 792  AQGWIDALNY----WAA---RSSKVPLLGGVTNVDYGWARCTGQRAQKSNAQLLKTKTDK 844

Query: 666  IIFENWQGSDLKAFFMEPTSLTEQKAFIEEIKKACKQ 776
            II   WQ   +        SL EQ +      K  K+
Sbjct: 845  IIVHKWQPQPVNT-IPSSLSLGEQLSAFNNFMKLLKK 880


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 754 SSIKAFCSVSDVGSIKNAFRSDPCQFSKIILGRILILFLAPFCLTDFIQAWSTSW 590
           SS+  FC   +  +   AF ++P  F    L +   LF   F  TD I  W++SW
Sbjct: 206 SSMNEFCYPKNGQTDVFAF-NEPAYFGSSDLDQSSPLFTGVFSSTDDIPEWASSW 259


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 754 SSIKAFCSVSDVGSIKNAFRSDPCQFSKIILGRILILFLAPFCLTDFIQAWSTSW 590
           SS+  FC   +  +   AF ++P  F    L +   LF   F  TD I  W++SW
Sbjct: 206 SSMNEFCYPKNGQTDVFAF-NEPAYFGSSDLDQSSPLFTGVFSSTDDIPEWASSW 259


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 887 QTIFSHFQTKLLYELNRLVSILS 819
           Q IFSHF T+LL+ L  L  I++
Sbjct: 102 QNIFSHFGTRLLHYLRSLFPIMN 124


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 677 LKDNSWKNFNIVPCTLLSHRFHPSM 603
           L+ N+  N N+ P T+L H  HPS+
Sbjct: 493 LQSNNAVNPNVSPSTVLEHAKHPSL 517


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 648 YCSLHPSVSQISSKHGLHHGAQL*CRYL 565
           YC   P    I S +G+H  A+L  RYL
Sbjct: 270 YCKKQPLTGGIESLYGIHWRAELNHRYL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,256,335
Number of Sequences: 5004
Number of extensions: 81101
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 737243038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)