Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E11.2
         (1341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0728 + 24686642-24687004,24687935-24688008,24689104-246891...    88   2e-17
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    30   3.6  
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    30   4.8  
01_04_0093 + 15956960-15956962,15957282-15957575,15957873-159580...    30   4.8  
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    29   6.3  
08_01_0914 + 9010613-9013316,9013537-9013748                           29   8.3  

>01_05_0728 + 24686642-24687004,24687935-24688008,24689104-24689184,
            24689256-24689337,24689596-24689693,24689722-24689860,
            24691259-24691613,24691923-24692173
          Length = 480

 Score = 87.8 bits (208), Expect = 2e-17
 Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 28/229 (12%)
 Frame = +3

Query: 405  HAPXHQAVYSQNFGNSVLGYVTPWNNKGYDIAKXWAPKFNYISPVWLQIKXQSPNIYIIT 584
            HA   +    ++F N VL YVTPWN+KGYD+AK ++ KF +ISPVW  +K    N  ++ 
Sbjct: 123  HATVSENRSRRHFRNPVLAYVTPWNSKGYDMAKLYSTKFTHISPVWYDLKSDG-NKLVLE 181

Query: 585  GLHDVDHAWMKSVRQKGARNNIKILPRIIFENWQGSDLKAFFMEPTS---LTEQKAFIEE 755
            G H+ D  W+  ++  G+     +LPR++ E + G  L    +   +   +  +  +   
Sbjct: 182  GQHNFDAKWVSELQSNGS----LVLPRVVLEAFPGVVLMKKKLRDKAIDLIVNECRYCYS 237

Query: 756  IKKACKQW-------KFDGVVLEMLSQIGKYA--------DKSVKFIQQFG--LEMTENG 884
                   W        +DGVVLE  S+   Y         +++++F++  G  L +T + 
Sbjct: 238  YNCQFVIWLSVNRDKGYDGVVLESWSRWAVYGVLDDSELRNRALQFVKHLGKTLPLTSSN 297

Query: 885  LS----LILVY----PPYRGFPTDEFYIQAFNDIYPYVEAVSVMTYDFS 1007
            LS    L L+Y    P  +     EF  +    +   V+  S+MTYDFS
Sbjct: 298  LSTHHHLKLIYVVPAPRMKELNNQEFRPEDLLQLADSVDGFSLMTYDFS 346


>07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-335368,
            336239-336536,337030-337131,337245-337613,337973-338115,
            338334-338518,339246-339475,339734-339821,340158-340253,
            340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -3

Query: 748  IKAFCSVSDVGSIKNAFRSDPCQFSKIILGRILILFLAPFCLTDFIQAWSTSWSPVMM*I 569
            IK   S  DV  +    R + C+   + L R +++    +  + FI  W  S +PV+  I
Sbjct: 810  IKYLMSAFDVPEVMAVTRINICKNGMMSLSRSVLMM---YYTSVFIYFWIFS-TPVVSLI 865

Query: 568  FGDXLFIC 545
            FG  L+IC
Sbjct: 866  FGSYLYIC 873


>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 953 KCLYIEFICREASIRWID*NQTQTIFSHFQTKLLYELNRLVSILSNLREHLKHNTI 786
           K L +EFIC  +   W+    T T  S+ +  ++  L+  V +   L E+L H+ +
Sbjct: 744 KALVLEFICNGSLDEWLHATSTTTSTSYRKLNMVERLHIAVDVAEAL-EYLHHHIV 798


>01_04_0093 +
           15956960-15956962,15957282-15957575,15957873-15958091,
           15958538-15958624,15959572-15959718,15961933-15962028,
           15962138-15962338
          Length = 348

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = -1

Query: 603 GLHHGAQL*CRYLVTXFLFVAILVRCS*ILVPIXSLCRNLCCSTA*HNLRQSFRN 439
           GL   A      L   FLF+ +L   S  LV      RNL   T  HNL Q +RN
Sbjct: 143 GLSVSAAFELSKLQVLFLFLGLLSLWSVDLVYFGGGVRNLILDTIGHNLSQKYRN 197


>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -2

Query: 896 NQTQTIFSHFQTKLLYELNRLVSILSNLREHLKHNTIKFPLLAS 765
           NQT     H    L+  +NR +S LSN R H KH     P L S
Sbjct: 352 NQTLYQSKHVVVILVGIVNRAISALSNRRPHHKHPGQFMPYLCS 395


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 953 KCLYIEFICREASIRWID*NQTQTIFSHFQTKLLYELNRLVSILSNLREHLKHNTI 786
           K L +EFIC      W+  N T    S+ +  L+  L+  + +   L E+L H+ +
Sbjct: 792 KALVLEFICNGTLDEWLHANTTAVRRSYTRINLMKRLHIALDVADAL-EYLHHHIV 846


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,257,272
Number of Sequences: 37544
Number of extensions: 484458
Number of successful extensions: 995
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4213554024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)