Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E11.2
         (1341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-1|AAA82362.2|  371|Caenorhabditis elegans Hypothetical pr...    96   6e-20
AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical...    68   1e-11
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   9.9  
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    29   9.9  

>U41030-1|AAA82362.2|  371|Caenorhabditis elegans Hypothetical protein
            C44C1.2 protein.
          Length = 371

 Score = 95.9 bits (228), Expect = 6e-20
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
 Frame = +3

Query: 444  GNSVLGYVTPWNNKGYDIAKXWAPKFNYISPVWLQIKXQSPNIYI----ITGLHDVDHAW 611
            G + L Y+TPWN  GY++A+  A K  ++SPVW Q K  S N  +    I G H+++  W
Sbjct: 58   GLTQLAYITPWNRHGYELAEKTAHKLTHVSPVWFQAKAFSENGKLDGCKIEGTHEINRDW 117

Query: 612  MKSVRQKGARNNIKILPRIIFENWQGSDLKAFFMEPTSLTEQKAFIEEIKKACKQWKFDG 791
            ++ +R+K    NI I+PRI+F+ W   ++K   M+  +   +  F E+I     + +F+G
Sbjct: 118  IEKLREK--NENIAIVPRILFDGWSAQEMKNLLMD--AKVARHCF-EDIANFYSRNQFEG 172

Query: 792  VVLEMLSQ----IGKYADKS--VKFIQQFGLEMTENGLSLILVYP---PYRGFPTDEFYI 944
             V+E+  Q    +     K   ++ IQ    +M +  + +IL  P    +   P +    
Sbjct: 173  AVVELYMQALISVQSLEVKEFIIESIQDLSRQMKKLHMQVILTVPAPLEWNNQPNNLVTP 232

Query: 945  QAFNDIYPYVEAVSVMTYDFSXHK-AGPCP 1031
              F  I    + V +MTYD+  +K AG  P
Sbjct: 233  DDFKKITAVSDFVQIMTYDYRGNKPAGVAP 262


>AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical
           protein R09B5.12 protein.
          Length = 388

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 44/166 (26%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
 Frame = +3

Query: 444 GNSVLGYVTPWNNKGYDIAKXWAPKFNYISPVWLQI-----KXQSPNIYIITGLHDVDHA 608
           G + L +VTPWN +G+ +A+  A +  YISPVW ++       Q  +   I G  D++  
Sbjct: 67  GMTQLAFVTPWNPRGFMLARKRAARLTYISPVWFRVHPLFDTDQELSDVGIYGKKDINPD 126

Query: 609 WMKSVRQKGARNNIKILPRIIFENWQGSDLKAFFMEPTSLTEQKAFIEEIKKACKQWKFD 788
           +++++R+  +  +IKI+PR  F+ ++ + LK F ++  +L ++    + +   C +  FD
Sbjct: 127 FIRALRK--SNPDIKIVPRFYFDEFKSAILKEFVVK-EALAQKVG--QTLANFCHKHGFD 181

Query: 789 GVVLEMLSQI------GKYADKSVKFIQQFGLEMTENGLSLILVYP 908
           G+V+++ S         ++   +++ I+  G  + +N L+ IL +P
Sbjct: 182 GLVIDLYSTFVDVIANSEFRLDALETIEHIGKVIRKNELTAILSFP 227


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 881 IFSHFQTKLLYELNRLVSILSNLREHLKHNTIKF 780
           +FS      ++E + L  +LSNL EH++++ + F
Sbjct: 138 VFSQLHRMSMHEEDELQQVLSNLPEHVRNSIVVF 171


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
            receptor, class w protein7 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
 Frame = -2

Query: 1094 STNIFILMIYPIIFFKYSSIQRAWTSFVXREIICHYRNSFYIRINII--KCLYIEFICRE 921
            ++   ++ +  I    +SS Q   TS       C Y    Y+   ++  + L  +F   +
Sbjct: 173  NSGFMVMSVIAIASTAWSSFQFLQTSIEKVTKYCTYNRPSYVPYLLLNNEKLVDKFNYAD 232

Query: 920  ASIRWID*NQTQTIFSHFQTKLLYELNRLVSILSNLREHLKHNTIKFPLLASFFYFLNKS 741
            + I  +      T++      L+ EL R      NLR    +NT K  ++ +   F+++S
Sbjct: 233  SCISLV----VSTLYVFVALALVVELQRTKKRRKNLRSEKPNNTTKLVVVMAATVFVSES 288

Query: 740  F 738
            F
Sbjct: 289  F 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,555,620
Number of Sequences: 27780
Number of extensions: 448945
Number of successful extensions: 1094
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3767217436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)