Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E08.2
         (1370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.12 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   0.92 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.1  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect(2) = 0.12
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 1024 PPPPPPPXP 998
            PPPPPPP P
Sbjct: 306  PPPPPPPPP 314



 Score = 25.0 bits (52), Expect(2) = 0.12
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 1060 PXXGXXXXXXXXPPPPPPP 1004
            P  G        PPPPPPP
Sbjct: 295  PSSGDSANGGLPPPPPPPP 313


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect(2) = 0.92
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 1069 PPXPXXGXXXXXXXXPPPPPPP 1004
            P  P           PPPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPP 1101



 Score = 23.4 bits (48), Expect(2) = 0.92
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 1021 PPPPPPXP 998
            PPPPPP P
Sbjct: 1095 PPPPPPPP 1102


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = -2

Query: 1150 PXPPXXXXXXXXXXXXXXXXXXPXXXXPPXPXXGXXXXXXXXPPPPPPP 1004
            P PP                  P    PP P           PPPPPPP
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 1069 PPXPXXGXXXXXXXXPPPPPPPXP 998
            PP P  G        PPPPPPP P
Sbjct: 763  PPPPPPGVAGAG---PPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 1069 PPXPXXGXXXXXXXXPPPPPPP 1004
            PP P           PPPPPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect(2) = 4.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 1021 PPPPPPXPXK 992
            PPPPPP P K
Sbjct: 907  PPPPPPLPVK 916



 Score = 20.6 bits (41), Expect(2) = 4.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 1024 PPPPPPP 1004
            P PPPPP
Sbjct: 905  PTPPPPP 911


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/45 (28%), Positives = 13/45 (28%)
 Frame = -3

Query: 915 PPXXPXXXXFXXPXXXGXXPXPPXXXXXXGXPXPPPXGXTPPPXP 781
           PP  P       P        PP        P  PP    PPP P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 23.8 bits (49), Expect(2) = 9.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 1024 PPPPPPP 1004
            PPPPPPP
Sbjct: 311  PPPPPPP 317



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 1018 PPPPPXP 998
            PPPPP P
Sbjct: 337  PPPPPPP 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 1069 PPXPXXGXXXXXXXXPPPPPPP 1004
            PP P           PPPPPPP
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,037
Number of Sequences: 5004
Number of extensions: 53281
Number of successful extensions: 283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 757114818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)