Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E05.2
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    33   0.11 
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   1.4  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 243 PFFRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKVEVHLDVQNFTPEQIQVKTVGN 422
           P   + I   R A   + D    E V+S  E+K+     ++++ + NFTP Q+Q+  + N
Sbjct: 124 PVLHELIHNWRSANGKVIDILMHESVFSPEEVKLIMD--QLNIPINNFTPSQLQLLGITN 181

Query: 423 EIMIEGKKEIKREDG 467
             ++   +  K ++G
Sbjct: 182 STIVGESENGKDQNG 196


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +3

Query: 294 EDSHGIEGVYSDSEIKVDGKKVEVHLDVQNFTPEQIQVKTVGNEIMIEGKKEIKREDGWT 473
           E SHGI     + EI +DGK  E+ L ++ +   + Q++++          E+  +D W 
Sbjct: 157 EPSHGITFESWEKEISIDGKTEEISLLLEEYPDLRKQMESL-------VPSEVSYDDFWK 209

Query: 474 RSHFERRFLLP 506
           R  + +  + P
Sbjct: 210 RFFWHKEVVQP 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,476
Number of Sequences: 5004
Number of extensions: 53453
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)