Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E05.2
         (1286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   1.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   5.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.6  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -1

Query: 587 QRFSSKGDKLQLPFIQVTLYSFRRETFRQKEPSLEVTPRPAVFSLYLFLALNHNFVTN-- 414
           +R+S   ++ Q  +     Y   RET   KE S + T R       +  +L++N+++N  
Sbjct: 275 KRYSRSREREQKSYKNENSYRKYRET--SKERSRDKTERERSKERKIISSLSNNYISNIS 332

Query: 413 SFHLNLLWGEILHIQVNF 360
           +++ N  + + L+  +N+
Sbjct: 333 NYNNNNNYNKKLYYNINY 350


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 626 VYRFLLNWHRPLLQRFSSKGDKL 558
           V RF+ NWH P+ + +  K D L
Sbjct: 257 VKRFI-NWHEPIPEAYFPKLDSL 278


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 375 VQNFTPEQIQVKTVGNEIMIEGKKEIKREDGWTRSH 482
           V+N+T +  QV + GN   +E    +KR  G+   H
Sbjct: 215 VKNYTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFH 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,953
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44183184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)