Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E04.2
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   157   2e-39
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   157   2e-39
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   157   2e-39
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    49   2e-06
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   7.4  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   7.4  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  157 bits (382), Expect = 2e-39
 Identities = 73/82 (89%), Positives = 80/82 (97%)
 Frame = +1

Query: 196 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 375
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 376 VTAMDVVYALKRQGRTLYGFGG 441
           VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82  VTSLDVVYSLKRQGRTIYGFGG 103


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  157 bits (382), Expect = 2e-39
 Identities = 73/82 (89%), Positives = 80/82 (97%)
 Frame = +1

Query: 196 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 375
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 376 VTAMDVVYALKRQGRTLYGFGG 441
           VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82  VTSLDVVYSLKRQGRTIYGFGG 103


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  157 bits (382), Expect = 2e-39
 Identities = 73/82 (89%), Positives = 80/82 (97%)
 Frame = +1

Query: 196 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 375
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 376 VTAMDVVYALKRQGRTLYGFGG 441
           VT++DVVY+LKRQGRT+YGFGG
Sbjct: 82  VTSLDVVYSLKRQGRTIYGFGG 103


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +1

Query: 235 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 414
           IR+LA     K+I+G + EE     ++F + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 255 RWSETYLRSYIRRDPRRSQSVPRKRDPR 338
           +++   +R++IR D  RS+   +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = -3

Query: 752 KRAFVCLFVFENEKFNNNQTNQRHLRLIYNINDSKKFLKHVSRW 621
           +    C     N   N  ++   H R  Y   D K ++KH   W
Sbjct: 563 RNLLTCAVQTANAALNRKESRGAHAREDYPERDDKNWIKHTLTW 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,219
Number of Sequences: 5004
Number of extensions: 44010
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)