Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E01.2
         (1301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    70   8e-13
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    70   8e-13

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 69.7 bits (163), Expect = 8e-13
 Identities = 34/70 (48%), Positives = 40/70 (57%)
 Frame = +1

Query: 163 NGKSKVXFXMRXXKGXXXRYSKXVLKKAXIDXXXRTGECIXEXVEKXXTIMSNXRQYKIP 342
           +GK KV F M   KG   RY+  V KKA ID   R GE   E +E+  TI+ N  Q+KIP
Sbjct: 21  DGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIP 80

Query: 343 YWFXNRXNDI 372
            WF NR  DI
Sbjct: 81  SWFLNRQKDI 90



 Score = 33.9 bits (74), Expect = 0.050
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           +DSK RE+LERLK I+  RG        V G      G R + V V
Sbjct: 103 VDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGV 148


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 69.7 bits (163), Expect = 8e-13
 Identities = 34/70 (48%), Positives = 40/70 (57%)
 Frame = +1

Query: 163 NGKSKVXFXMRXXKGXXXRYSKXVLKKAXIDXXXRTGECIXEXVEKXXTIMSNXRQYKIP 342
           +GK KV F M   KG   RY+  V KKA ID   R GE   E +E+  TI+ N  Q+KIP
Sbjct: 21  DGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIP 80

Query: 343 YWFXNRXNDI 372
            WF NR  DI
Sbjct: 81  SWFLNRQKDI 90



 Score = 33.9 bits (74), Expect = 0.050
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           +DSK RE+LERLK I+  RG        V G      G R + V V
Sbjct: 103 VDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGV 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,761
Number of Sequences: 5004
Number of extensions: 12272
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)