Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E01.2
         (1301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582           67   3e-11
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...    51   2e-06
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...    49   9e-06
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978           42   0.001

>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 29/69 (42%), Positives = 40/69 (57%)
 Frame = +1

Query: 163 NGKSKVXFXMRXXKGXXXRYSKXVLKKAXIDXXXRTGECIXEXVEKXXTIMSNXRQYKIP 342
           +GK K+ F +   KG   R+S    KKA ID   R GE   E +E+  T+++N RQ+K+P
Sbjct: 17  DGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELERLMTVVANPRQFKVP 76

Query: 343 YWFXNRXND 369
            WF NR  D
Sbjct: 77  DWFLNRKKD 85



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           LD K R++LERLK IR  RG   YW   V G      G R + V V
Sbjct: 99  LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGV 144


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
 Frame = +1

Query: 163 NGKSKVXFXMRXXKGXXXRYSKXVLKKAXIDXXXRTG----------------ECIXEXV 294
           +GK K+ F +   KG   R+S    KKA ID   R+G                E   E +
Sbjct: 21  DGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVCYYLAVHNYVEWAGELTPEEL 80

Query: 295 EKXXTIMSNXRQYKIPYWFXNRXND 369
           E+  T+++N RQ+K+P WF NR  D
Sbjct: 81  ERLMTVVANPRQFKVPDWFLNRKKD 105



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           LD K R++LERLK IR  RG   YW   V G      G R + V V
Sbjct: 119 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGV 164


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
 Frame = +1

Query: 163 NGKSKVXFXMRXXKGXXXRYSKXVLKKAXIDXXXR------------------TGECIXE 288
           +GK K+ F +   KG   R+S    KKA ID   R                   GE   E
Sbjct: 21  DGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPPPPSRRQISVMVGGAGELTPE 80

Query: 289 XVEKXXTIMSNXRQYKIPYWFXNRXND 369
            +E+  T+++N RQ+K+P WF NR  D
Sbjct: 81  ELERLMTVVANPRQFKVPDWFLNRKKD 107



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           LD K R++LERLK IR  RG   YW   V G      G R + V V
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGV 166


>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
          Length = 78

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           LD K R++LERLK IR  RG   YW   V G      G R + V V
Sbjct: 29  LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,374,708
Number of Sequences: 37544
Number of extensions: 70666
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4062238548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)