Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_E01.2
         (1301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...    62   1e-09

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 29/70 (41%), Positives = 37/70 (52%)
 Frame = +1

Query: 163 NGKSKVXFXMRXXKGXXXRYSKXVLKKAXIDXXXRTGECIXEXVEKXXTIMSNXRQYKIP 342
           +G  KV + +   KG   R++    +KA +D   R GE   E  +K  TIM N  QYKIP
Sbjct: 21  DGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKIVTIMQNPSQYKIP 80

Query: 343 YWFXNRXNDI 372
            WF NR  DI
Sbjct: 81  NWFLNRQKDI 90



 Score = 41.9 bits (94), Expect = 0.001
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +2

Query: 410 LDSKFRENLERLKXIRAXRGXXDYWXXXVSGXXIXXIGXRXRXVXV 547
           +D+K RE+LER+K IR  RG   YW   V G      G + R V V
Sbjct: 103 VDNKLREDLERMKKIRLHRGLRHYWGLRVRGQHTKTTGRKGRTVGV 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,445,561
Number of Sequences: 27780
Number of extensions: 64148
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3631930622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)