Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_D24.2
(1224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 32 0.80
02_04_0103 - 19768288-19768737 32 1.1
02_01_0475 + 3422629-3422695,3422960-3423216 31 1.8
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 31 2.4
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415 29 5.6
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 32.3 bits (70), Expect = 0.80
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
KKKK KKKK KKK K K KKKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKK 100
Score = 32.3 bits (70), Expect = 0.80
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
KKKK KKKK KKK K K KKKK
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKK 101
Score = 32.3 bits (70), Expect = 0.80
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 186 KKKKXXXKKKXXPPXXKKKXKKXXXXXKKKKK 281
KKKK KKK KKK KK KKKKK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 32.3 bits (70), Expect = 0.80
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 186 KKKKXXXKKKXXPPXXKKKXKKXXXXXKKKKK 281
KKKK KKK KKK KK KKKKK
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 186 KKKKXXXKKKXXPPXXKKKXKKXXXXXKKKKK 281
KKKK KKK KKK KK KKKKK
Sbjct: 76 KKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
KKKK KKKK KKK K K KKK+
Sbjct: 77 KKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
KKKK KKKK KKK K KKKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKK 99
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
KKKK KKKK KK K K KKKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKK 102
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 186 KKKKXXXKKKXXPPXXKKKXKKXXXXXKKKKK 281
KKKK KKK K K KK KKKKK
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKK 103
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
KKKK KKKK KK K K KKKK
Sbjct: 73 KKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
>02_04_0103 - 19768288-19768737
Length = 149
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKKXG 286
K+K+ KKKK KKK K K KKKK G
Sbjct: 107 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKG 140
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKKXGG 289
+K+K KKKK KKK K K KKKK G
Sbjct: 106 RKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKG 140
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +3
Query: 189 KKKXXXKKKXXPPXXKKKXKKXXXXXKKKKKXGGGXXXXGGG 314
KKK KKK KKK KK KKK K G G
Sbjct: 43 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSAVTNLGAG 84
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -2
Query: 278 FFFFXXXXXFFXFFFXXXGGXFFFXXXFFFF 186
FFFF FF FFF FFF FFFF
Sbjct: 62 FFFFFFFFFFFFFFF------FFFFFFFFFF 86
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 280 FFFFXFXXXXFXXFFFXXGGXFFFF 206
FFFF F F FFF FFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFFF 86
>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
Length = 126
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 185 KKKKXXXKKKKXPPXXKKKXXKXXXXKXKKKK 280
+KKK K KK P K K K K KKKK
Sbjct: 43 RKKKAKAKVKKKPKKKKNKKAKKKKKKKKKKK 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.145 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,532
Number of Sequences: 37544
Number of extensions: 177524
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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