Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_D23.2
         (1251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.1  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    27   5.4  

>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 251 LQTFSLLLIFYDLFLRRNRLNR 186
           L+TF L  +F+ +FLR+N ++R
Sbjct: 178 LETFLLFRLFFGVFLRKNSISR 199


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 185 PSSILTKIFVLCFD*MNDNCNI*SKLCRGKCXLSS 81
           P  ++ KI  LCF+ + D  ++  KL   KC L S
Sbjct: 76  PKDLVNKIASLCFEDVIDTSHVSIKLTLPKCVLRS 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,150
Number of Sequences: 5004
Number of extensions: 23937
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)